Info • Fistulifera solaris JPCC DA0580

Status

The Fistulifera solaris JPCC DA0580 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on October 31, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Fistulifera solaris JPCC DA0580 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.74
Sequencing read coverage depth
# of contigs 1304
# of scaffolds 295
# of scaffolds >= 2Kbp 295
Scaffold N50 49
Scaffold L50 (Mbp) 0.33
# of gaps 1009
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 0.90, 0.85, 0.76


Gene Models ExternalModels
length (bp) of: average median
gene 2122 1789
transcript 2019 1715
exon 1140 925
intron 136 81
description:
protein length (aa) 495 403
exons per gene 1.77 1
# of gene models 20413


Genome Reference(s)

Funding

This project was not sequenced at the JGI.