Status
The Fistulifera solaris JPCC DA0580 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on October 31, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Fistulifera solaris JPCC DA0580
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 49.74 |
Sequencing read coverage depth | |
# of contigs | 1304 |
# of scaffolds | 295 |
# of scaffolds >= 2Kbp | 295 |
Scaffold N50 | 49 |
Scaffold L50 (Mbp) | 0.33 |
# of gaps | 1009 |
% of scaffold length in gaps | 1.4% |
Three largest Scaffolds (Mbp) | 0.90, 0.85, 0.76 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 2122 | 1789 |
transcript | 2019 | 1715 |
exon | 1140 | 925 |
intron | 136 | 81 |
description: | ||
protein length (aa) | 495 | 403 |
exons per gene | 1.77 | 1 |
# of gene models | 20413 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Tanaka T, Maeda Y, Veluchamy A, Tanaka M, Abida H, Maréchal E, Bowler C, Muto M, Sunaga Y, Tanaka M, Yoshino T, Taniguchi T, Fukuda Y, Nemoto M, Matsumoto M, Wong PS, Aburatani S, Fujibuchi W
Oil accumulation by the oleaginous diatom Fistulifera solaris as revealed by the genome and transcriptome.
Plant Cell. 2015 Jan;27(1):162-76. doi: 10.1105/tpc.114.135194
Tanaka T, Maeda Y, Veluchamy A, Tanaka M, Abida H, Maréchal E, Bowler C, Muto M, Sunaga Y, Tanaka M, Yoshino T, Taniguchi T, Fukuda Y, Nemoto M, Matsumoto M, Wong PS, Aburatani S, Fujibuchi W
Oil accumulation by the oleaginous diatom Fistulifera solaris as revealed by the genome and transcriptome.
Plant Cell. 2015 Jan;27(1):162-76. doi: 10.1105/tpc.114.135194
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Heterokonta Ochrophyta Bacillariophyta Bacillariophyceae
Funding
This project was not sequenced at the JGI.