Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Peptidases • Oomycota
Annotations/GenomesPhyca11Phyci1Phyinf1Phyra1_1Physo3Sappar1TotalAnnotation Description
Merops
5234473704274585242,749
1143991123613323Water nucleophile; water bound by two Asp from monomer or dimer; all endopeptidases, from eukaryote organisms, viruses or virus-like organisms
76435328Water nucleophile; water bound by two Asp; all membrane-bound endopeptidases known only from eubacteria with active site on cytoplasmic side of cell membrane.
513341293675265Cysteine nucleophile; catalytic residues in the order Cys, His, Asn (or Asp) in sequence
33323317Cysteine nucleophile; catalytic residues in the order His, Cys in sequence
201914318175Cysteine nucleophile; catalytic residues in the order His, Glu (or Asp), Cys in sequence
123Cysteine nucleophile; catalytic residues in the order Glu, Cys, His in sequence
211127Cysteine nucleophile; catalytic residues in the order His, Cys in sequence
5641051343Families of peptidase inhibitors not assigned to clans
417511037
11316
5118512142
51111211
112
213
2215Families of metallopeptidases not assigned to clans
251622121745137Water nucleophile; water bound by single zinc ion ligated to two His (within the motif HEXXH) and Glu, His or Asp
11221916Water nucleophile; water bound by single zinc ion ligated to His, Glu (within the motif HXXE) and His
1113Water nucleophile; water bound by single zinc ion ligated to two His (within the motif HXXEH) and Glu
42252621Water nucleophile; water bound by two zinc ions ligated by Lys, Asp, Asp, Asp, Glu
1010810101159Water nucleophile; water bound by two cobalt or manganese ions ligated by Asp, Asp, His, Glu, Glu
109810131060Water nucleophile; water bound by two zinc ions ligated by His (or Asp), Asp, Glu, Asp (or Glu), His
810878849Water nucleophile; water bound by two zinc ions ligated by His, His or Asp, Lys or Glu, His, His.
111115Water nucleophile; water bound by single zinc ion ligated to two His (within the motif HEXXH) and Asp; membrane proteins with intramembrane active site.
55445528Water nucleophile; water bound by single zinc ion ligated to two His and Asp (within the motif HSHP(X)9D)
221229Asparagine nucleophile; catalytic residues in the order Asp, Asn in sequence; all self-processing endopeptidases
243824293820173Serine or cysteine nucleophile; catalytic residues in the order His, Asp, Ser (or Cys) in sequence; all endopeptidases
232225232247162Threonine, serine or cysteine nucleophile at the N-terminus of mature enzyme
859881452Serine or cysteine nucleophile; catalytic residues in the order Cys (or Ser), His, Glu in sequence.
2111229Serine or threonine nucleophile; N-terminal nucleophile
7611562358Serine nucleophile; catalytic residues in the order Asp, His, Ser in sequence in family S8, but family S53 differs
144153127118169163874Serine nucleophile; catalytic residues in the order Ser, Asp, His in sequence
211114Serine nucleophile; catalytic residues in the order Ser, Lys (within the motif SXXK) in sequence
33443724Serine nucleophile; catalytic residues in the order Ser, Lys (or His) in sequence
211116Serine nucleophile; catalytic residues in the order Ser, Lys in sequence
73123117Serine nucleophile; catalytic residues in the order Ser, His, Asp in sequence
1113Serine nucleophile; catalytic residues in the order His, Ser within the motif HXS.
11114Serine nucleophile; catalytic residues in the order Ser, Glu, His
34536526Serine nucleophile; transmembrane protein with catalytic residues in the order Ser, His embedded in the membrane
11Families of peptidases of unknown catalytic mechanism not assigned to clans
12121210101571
11