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PFAM Domains • Ochrophyta
Annotations/GenomesAuran1Ectsil1Fracy1Nangad1Nanoce1779_2Ochro2298_1Pelago2097_1Phatr2Psemu1Thaoce1Thaps3TotalAnnotation Description
PFAMs
7,97113,33010,4248,4288,97611,40812,8505,5448,49313,6586,304107,386
1347 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
217222782427 transmembrane sweet-taste receptor of 3 GCPR
6664674849686847577556665ATPase family associated with various cellular activities (AAA)
11673818177678049547950807ABC transporter
44574104387460ATP synthase alpha/beta family, nucleotide-binding domain
574124629EGF-like domain
1924262121232221222322244Elongation factor Tu GTP binding domain
25633542535Helix-loop-helix DNA-binding domain
314674213545Hsp20/alpha crystallin family
82110131224156102011150Hsp70 protein
132015111617138131113150KH domain
1113Ribulose bisphosphate carboxylase large chain, catalytic domain
4329SH2 domain
16211141329SH3 domain
33TNFR/NGFR cysteine-rich region
1414971016117864106Actin
18514093919515262777074832Ankyrin repeat
211138PAN domain
91479915114788101ADP-ribosylation factor family
6787743665665Eukaryotic aspartyl protease
86451681027479204222332Cyclic nucleotide-binding domain
121217Cystatin domain
2147Cytochrome b(C-terminal)/b6/petD
1112128Cytochrome b/b6/petB
513121333325Cytochrome c
1212111211Double-stranded RNA binding motif
22166611944559766485EF hand
11121145164Fe-4S binding domain
22Fibronectin type II domain
11105188116859Fibronectin type III domain
1342213144126Globin
101016441287122287Glutathione S-transferase, C-terminal domain
2575443674552Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
32329322Kazal-type serine protease inhibitor domain
415313Kringle domain
112Laminin B (Domain IV)
437Laminin EGF domain
1312221111217lactate/malate dehydrogenase, NAD binding domain
11Low-density lipoprotein receptor repeat class B
53216522Lectin C-type domain
3227Ligand-gated ion channel
11Lipocalin / cytosolic fatty-acid binding protein family
31249573217491411163Myosin head (motor domain)
31123138LNR domain
513301216155621177147Cytochrome P450
2613071881311532302041131731931412,094Protein kinase domain
1921241620141817162020205Pyridine nucleotide-disulphide oxidoreductase
3451181819513112162424298Ras family
81522339345122076234Response regulator receiver domain
414110RNase H
67767363647311253594559744RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
123Retroviral aspartyl protease
21115156Reverse transcriptase (RNA-dependent DNA polymerase)
415Serpin (serine protease inhibitor)
32132222118Copper/zinc superoxide dismutase (SODC)
2622322223430Iron/manganese superoxide dismutases, alpha-hairpin domain
14141771111191310157138Subtilase family
221814161521201691615182Sugar (and other) transporter
3349472726344521403428384Thioredoxin
112Trefoil (P-type) domain
83833128414526175Trypsin
112Thrombospondin type 1 domain
1518499108535894Tubulin/FtsZ family, GTPase domain
165228428von Willebrand factor type A domain
66von Willebrand factor type D domain
124102232831754Zinc finger, C2H2 type
517103756104372542351Zinc finger, C3HC4 type (RING finger)
832831615861410156Zinc knuckle
112Ribulose bisphosphate carboxylase, small chain
2113119Protein-tyrosine phosphatase
5044665356435945515839564short chain dehydrogenase
2062416127151416917156Zinc-binding dehydrogenase
4443443443441Thiolase, N-terminal domain
48731697172324118Beta-ketoacyl synthase, N-terminal domain
8191014132419611971402Fe-2S iron-sulfur cluster binding domain
2991781013148141111144Papain family cysteine protease
4332244131229Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
8887779689885Glutamine amidotransferase class-I
131115141418111010910135TCP-1/cpn60 chaperonin family
22116ATP synthase A chain
5342223234333Glutamine synthetase, catalytic domain
6383384365554Triosephosphate isomerase
191818222620217141017192E1-E2 ATPase
22610Photosynthetic reaction centre protein
473527111029412153625251Core histone H2A/H2B/H3/H4
22Bacterial regulatory helix-turn-helix protein, lysR family
123Copper binding proteins, plastocyanin/azurin family
33Alpha amylase, catalytic domain
143221114Phorbol esters/diacylglycerol binding domain (C1 domain)
911114109106117896Bacterial transferase hexapeptide (six repeats)
7673766877872tRNA synthetases class I (I, L, M and V)
1215271017101324255050253Cyclin, N-terminal domain
42733213126Carboxylesterase family
355454446343DNA polymerase family B
23621321076648ATP synthase subunit C
21216Legume lectin domain
211116Sigma-70 factor, region 1.2
21474411855241498Peroxidase
114Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
518101054131158Beta-lactamase
31811458132C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
22Nitrogenase component 1 type Oxidoreductase
3829352626333424272427323Calcineurin-like phosphoesterase
223913351240Cellulase (glycosyl hydrolase family 5)
5677686667670tRNA synthetases class II (D, K and N)
5658695453586557626353648Mitochondrial carrier protein
2114recA bacterial DNA recombination protein
1915291619222011221918210Aminotransferase class I and II
85117836863671Phosphoribosyl transferase domain
314Sigma-54 interaction domain
4328372324294220275124348Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
2644483342545Phosphoglycerate kinase
122412222220Ribosomal protein S4/S9 N-terminal domain
1122113122117Ribosomal protein S12/S23
4533335444442Chaperonin 10 Kd subunit
112Fibroblast growth factor
3436161215244618191511246C2 domain
302912121332261010811193PH domain
91175588814883bZIP transcription factor
1881312121711610138128Aldehyde dehydrogenase family
242211011463Fungal Zn(2)-Cys(6) binuclear cluster domain
2620221415142314182221209Cytochrome b5-like Heme/Steroid binding domain
4242211123224Oxidoreductase molybdopterin binding domain
1711248971612131712146Oxidoreductase NAD-binding domain
2938352526273918303123321SNF2 family N-terminal domain
1113121123117Ribosomal protein S7p/S5e
2332261818292418222419253Ubiquitin-conjugating enzyme
1222232122221Isocitrate/isopropylmalate dehydrogenase
1112121122115Ribosomal Proteins L2, RNA binding domain
6814Chitinase class I
5454464243445Hsp90 protein
2224222222224Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
211221121215Dihydrofolate reductase
121228Chitin recognition protein
121111034Cysteine-rich secretory protein family
1113111122115Ribosomal protein S3, C-terminal domain
81110Cupin
321112212Annexin
11531113218Eukaryotic-type carbonic anhydrase
13419Chalcone and stilbene synthases, N-terminal domain
11121118Bacterial regulatory proteins, luxR family
44665754535542-oxoacid dehydrogenases acyltransferase (catalytic domain)
111115Catalase
112Disintegrin
22111411UDP-glucoronosyl and UDP-glucosyl transferase
104106798789583Aminotransferase class-III
1113132122118Ribosomal protein S19
2232242234430DNA gyrase B
2321111112Thiamine pyrophosphate enzyme, central domain
5334322333233Lyase
1342232324329Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
13123414Sodium:neurotransmitter symporter family
111126Ferritin-like domain
8913133139201392Adenylate and Guanylate cyclase catalytic domain
1111111113113ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
1211213314Bacterial DNA-binding protein
1221142111117ATP:guanido phosphotransferase, C-terminal catalytic domain
2534442445340Indole-3-glycerol phosphate synthase
111115Aromatic amino acid lyase
2226Photosystem I psaA/psaB protein
6384566566661Pyruvate kinase, barrel domain
6256192118826017192524403Kinesin motor domain
10451102383552102526410959768DnaJ domain
2127252527282517243121271Proteasome subunit
4444926432244Major intrinsic protein
2222372223229ATP synthase
1313511111119Glycosyl hydrolase family 1
10611561191011793'5'-cyclic nucleotide phosphodiesterase
112Profilin
1233222233225Ribosomal protein L22p/L17e
1113121122116Ribosomal protein L14p/L23e
25292521212128716384235Ubiquitin family
312245121122Cofilin/tropomyosin-type actin-binding protein
222111312412014-3-3 protein
11226Alkaline phosphatase
6581117139253Zinc carboxypeptidase
4814371817203118282626283Aldo/keto reductase family
4734472625251928282529333Myb-like DNA-binding domain
3115Glycosyl hydrolases family 32 N-terminal domain
131211211Ribosomal protein L16p/L10e
1121122212Ribosomal protein S14p/S29e
5325521616284024313125341FKBP-type peptidyl-prolyl cis-trans isomerase
5634485327451Glutathione peroxidase
3223212
541445546710670Flavodoxin
11
2211233111118Calreticulin family
229211461147Common central domain of tyrosinase
22Thymidine kinase
671067813396479Aminotransferase class-V
3332222224328Ribonucleotide reductase, small chain
7371715562659159577364741DEAD/DEAH box helicase
1101101328092901357810494861,111Helicase conserved C-terminal domain
333443115330Fructose-bisphosphate aldolase class-I
1112121112114EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
123222234122Ribosomal protein L23
3563344343240Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1621111316Potato inhibitor I family
2112111112114Ribosomal protein L5
2344322223229Pyridoxal-dependent decarboxylase conserved domain
2147Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
1135Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
221356411126Citrate synthase, C-terminal domain
7983577376668GHMP kinases N terminal domain
9785788687982Biotin carboxylase, N-terminal domain
211111111111Tryptophan synthase alpha chain
151115121117148131411141Pyridoxal-phosphate dependent enzyme
1618292426181920232522240NUDIX domain
79889108398584pfkB family carbohydrate kinase
442102224Glycosyl hydrolases family 28
2233232221224Ribosomal protein L3
3232112224224Ribosomal protein L11, RNA binding domain
3228501318224513403222315Histidine phosphatase superfamily (branch 1)
1222131323222Rubredoxin
1111112211113Thymidylate synthase
42113112Lipoxygenase
4446394367454ATP synthase alpha/beta chain, C terminal domain
101214339111247Calponin homology (CH) domain
11Bacterial dnaA protein
45744436711055Glutamine amidotransferases class-II
1131131223220Phosphoenolpyruvate carboxylase
4534453333340Ribosomal protein S15
911011414567563'Cold-shock' DNA-binding domain
4127Thaumatin family
37137663694468Fructose-1-6-bisphosphatase, N-terminal domain
5432222222228Ribonucleotide reductase, all-alpha domain
2113121122117Ribosomal protein S2
21312233421Amino acid permease
5611446531011671Prolyl oligopeptidase family
112111222215Ribosomal protein L30p/L7e
296695944458Histidine phosphatase superfamily (branch 2)
112Respiratory-chain NADH dehydrogenase, 30 Kd subunit
2323352222228Aconitase family (aconitate hydratase)
121127Glycosyl hydrolase family 10
1113Glycosyl hydrolases family 17
2343222223227Ribosomal protein S5, N-terminal domain
5723333335441Nucleoside diphosphate kinase
1113Tetraspanin family
1211117Galactoside-binding lectin
1113112112115Ribosomal protein S10p/S20e
132323115Arrestin (or S-antigen), N-terminal domain
3352213346436Phosphoglucose isomerase
1212111113216SecY translocase
11Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2113121112116Ribosomal protein L6
7665356554557Polyprenyl synthetase
10114101111112311286Dynamin family
1112117Biopterin-dependent aromatic amino acid hydroxylase
121111111111Transcription factor TFIID (or TATA-binding protein, TBP)
1118323RTX calcium-binding nonapeptide repeat (4 copies)
14101091412879106109Rieske [2Fe-2S] domain
415Phytochrome region
3137Proton-conducting membrane transporter
22Integrin beta chain VWA domain
131312111315169131013138Biotin-requiring enzyme
4312233223227Phosphofructokinase
2233222222224Ribosomal protein S17
13141111114Hydroxymethylglutaryl-coenzyme A reductase
4343323552438FGGY family of carbohydrate kinases, N-terminal domain
11226FERM central domain
421310Sodium:dicarboxylate symporter family
17121312141086121412130Enoyl-CoA hydratase/isomerase
2223222233225Ribosomal protein S9/S16
11122211112Transcription factor TFIIB repeat
5687657885873Cytidine and deoxycytidylate deaminase zinc-binding region
112Molybdopterin oxidoreductase
51361514228Chromo (CHRromatin Organisation MOdifier) domain
11C1q domain
21521243323Phosphatidylinositol-specific phospholipase C, Y domain
43521234327Phosphatidylinositol-specific phospholipase C, X domain
2452446344240D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
431212111117Malic enzyme, N-terminal domain
214229121226PEP-utilising enzyme, mobile domain
1121112332176-phosphogluconate dehydrogenase, C-terminal domain
3216Multicopper oxidase
454821128256415182922307WW domain
3223223222225Ribosomal RNA adenine dimethylase
17219911210211417523488102741011,473WD domain, G-beta repeat
112ATP synthase, Delta/Epsilon chain, long alpha-helix domain
5642235232135Heavy-metal-associated domain
81073795789881Adenylate kinase
3333322331228Phosphoglucomutase/phosphomannomutase, C-terminal domain
1212111112114Ribosomal protein S8
1113111122115Ribosomal protein S11
31331112LIM domain
2147Matrixin
2424811121630671216166Regulator of chromosome condensation (RCC1) repeat
1113111111113Ribosomal protein S13/S18
11
2248Photosystem II protein
2333423132329chorismate binding enzyme
454455244454660s Acidic ribosomal protein
123ATP synthase B/B' CF(0)
112CUB domain
4432243433436Prenyltransferase and squalene oxidase repeat
713232124227Protein kinase C terminal domain
11111112110Single-strand binding protein family
112Type II/IV secretion system protein
512112221219S-adenosylmethionine synthetase, N-terminal domain
1334231622282016233316244Bromodomain
116767107672574Acyl-CoA dehydrogenase, C-terminal domain
2142251518311818202816252Ubiquitin carboxyl-terminal hydrolase
11211118Ribosomal protein L36
11212119Ribonuclease T2 family
12214466101250314560297HSF-type DNA-binding
4444424444442SRP54-type protein, GTPase domain
211121111112Urease alpha-subunit, N-terminal domain
1231197127666483Serine carboxypeptidase
1112111112113Ribosomal protein L20
1716121615101511101011143Phosphatidylinositol 3- and 4-kinase
1222231232222Transketolase, thiamine diphosphate binding domain
615523224232WHEP-TRS domain
6910665951012987Inositol monophosphatase family
31117771013514137107Glutaredoxin
1131131122117Isocitrate lyase family
3334343235336Serine hydroxymethyltransferase
123321214Iron-containing alcohol dehydrogenase
4331344333334Ribosomal protein L10
6215534534644KOW motif
11111112110Ribosomal protein L34
1111111121112Ribosomal protein L33
3664576546456RF-1 domain
432216424230Sodium:solute symporter family
1111121211113Imidazoleglycerol-phosphate dehydratase
131134311220DNA polymerase family A
2212241111118IMP dehydrogenase / GMP reductase domain
212121131115Glucose-6-phosphate dehydrogenase, NAD binding domain
12122111112ROK family
3135241919243020212119263Protein phosphatase 2C
22Type II secretion system (T2SS), protein F
32113212Nucleotidyl transferase
21237217Carbonic anhydrase
1322243323227Phosphoribulokinase / Uridine kinase family
415Transcriptional regulatory protein, C terminal
1013201114201713141417163Fatty acid desaturase
5876887278773MutS domain V
111121121112Delta-aminolevulinic acid dehydratase
1411121211116Arginase family
119998885810893MCM P-loop domain
3333333243232Squalene/phytoene synthase
11237Bacterial extracellular solute-binding proteins, family 5 Middle
312511Bacterial extracellular solute-binding proteins, family 3
71611141211196796118FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
3422212823153012192116241AMP-binding enzyme
4611123113225G-protein alpha subunit
6155762226466439577139556Chlorophyll A-B binding protein
121034897931252420189HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
3714225535921103His Kinase A (phospho-acceptor) domain
431484531895211140Armadillo/beta-catenin-like repeat
9441701718313560562856506Tetratricopeptide repeat
5939131410163010131616236Ion transport protein
2232252237434DNA gyrase/topoisomerase IV, subunit A
415Scavenger receptor cysteine-rich domain
7101365468656BRCA1 C Terminus (BRCT) domain
101413912141841176118Glycosyl transferases group 1
15466739638774Glycosyl transferase family 2
513881210148SAM domain (Sterile alpha motif)
11522322318351linker histone H1 and H5 family
613222333227Ribosomal protein L7/L12 C-terminal domain
112Pectate lyase
211121111112Urease, gamma subunit
43443332412