PFAM Domains • Chlorophyceae
Annotations/GenomesChlre4Chrzof1Dunsal1Gonpec1Monneg1Rapsub1SceoblEN4_1Sobl393_1Volca1TotalAnnotation Description
PFAMs
7,56512,05710,95812,14810,40111,19710,78213,7043,41992,231
526261615662577037518ATPase family associated with various cellular activities (AAA)
647357829082758930642ABC transporter
46546655243ATP synthase alpha/beta family, nucleotide-binding domain
91132117EGF-like domain
172525211921212710186Elongation factor Tu GTP binding domain
8542351533Helix-loop-helix DNA-binding domain
681674657160Hsp20/alpha crystallin family
89121511998586Hsp70 protein
1313131210158134101KH domain
1121117Kunitz/Bovine pancreatic trypsin inhibitor domain
112SH3 domain
33TNFR/NGFR cysteine-rich region
512678958262Actin
1074654992621143428429Ankyrin repeat
1223236129PAN domain
161112141112111411112ADP-ribosylation factor family
31111247121Eukaryotic aspartyl protease
18241628162014273166Cyclic nucleotide-binding domain
12148Beta/Gamma crystallin
1211221111Cystatin domain
11Cytochrome b(C-terminal)/b6/petD
411111110Cytochrome c
221412315Double-stranded RNA binding motif
101243631435159EF hand
61211211154Fe-4S binding domain
453471356148Fibronectin type III domain
11Globin
91481193910174Glutathione S-transferase, C-terminal domain
32433435229Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
2111117Homeodomain
7233513226Kazal-type serine protease inhibitor domain
1124Laminin EGF domain
56554667448lactate/malate dehydrogenase, NAD binding domain
1527659246Lectin C-type domain
171346166760Ligand-gated ion channel
33339624235Myosin head (motor domain)
112LNR domain
35493438523345566348Cytochrome P450
2114Phospholipase A2
4232572465843042822222831882,789Protein kinase domain
1618111871315198125Pyridine nucleotide-disulphide oxidoreductase
14191430151817197153Ras family
1210141489813391Response regulator receiver domain
2125RNase H
85978881941188910338793RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
3836631286Reverse transcriptase (RNA-dependent DNA polymerase)
114226521Serpin (serine protease inhibitor)
44543555237Iron/manganese superoxide dismutases, alpha-hairpin domain
10191721383057892283Subtilase family
162287282528377178Sugar (and other) transporter
112Sushi repeat (SCR repeat)
263532393442374711303Thioredoxin
112Trefoil (P-type) domain
91147192510115101Trypsin
1135Thrombospondin type 1 domain
1010911109910987Tubulin/FtsZ family, GTPase domain
5211121316von Willebrand factor type A domain
8223132526Zinc finger, C2H2 type
796477771028155Zinc finger, C3HC4 type (RING finger)
1228161491118116125Zinc knuckle
21222212317Ribulose bisphosphate carboxylase, small chain
3532413223Protein-tyrosine phosphatase
365841354646425817379short chain dehydrogenase
13221613171215185131Zinc-binding dehydrogenase
22223221319Thiolase, N-terminal domain
44115126105158Beta-ketoacyl synthase, N-terminal domain
13101111812111591002Fe-2S iron-sulfur cluster binding domain
152741638943864242Papain family cysteine protease
11113222114Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11111112110Cytochrome C oxidase subunit II, periplasmic domain
578737511558Glutamine amidotransferase class-I
12131415211311128119TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
54355444236Glutamine synthetase, catalytic domain
11112118Triosephosphate isomerase
20241918222422335187E1-E2 ATPase
12431681261936402744515Core histone H2A/H2B/H3/H4
11111111210Copper binding proteins, plastocyanin/azurin family
8101067813171089Alpha amylase, catalytic domain
112Phorbol esters/diacylglycerol binding domain (C1 domain)
121078913910886Bacterial transferase hexapeptide (six repeats)
57659668456tRNA synthetases class I (I, L, M and V)
14167221518212612151Cyclin, N-terminal domain
1214Carboxylesterase family
47564536343DNA polymerase family B
42444222226ATP synthase subunit C
145Legume lectin domain
61274941012367Peroxidase
114Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
22223415Beta-lactamase
510696681060C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
134Fibrinogen beta and gamma chains, C-terminal globular domain
11Nitrogenase component 1 type Oxidoreductase
25252322232827388219Calcineurin-like phosphoesterase
13251513141678Cellulase (glycosyl hydrolase family 5)
58659666556tRNA synthetases class II (D, K and N)
444853434840445122393Mitochondrial carrier protein
13111119recA bacterial DNA recombination protein
11222419292422227180Aminotransferase class I and II
97664868357Phosphoribosyl transferase domain
1121128Sigma-54 interaction domain
242326241723272216202Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
21336223224Phosphoglycerate kinase
1212332115Ribosomal protein S4/S9 N-terminal domain
22223322119Ribosomal protein S12/S23
44444446135Chaperonin 10 Kd subunit
28261220101312196146C2 domain
57742646243PH domain
61741081591281bZIP transcription factor
81171115101115795Aldehyde dehydrogenase family
14111210101413168108Cytochrome b5-like Heme/Steroid binding domain
23314436228Oxidoreductase molybdopterin binding domain
8121211141213195106Oxidoreductase NAD-binding domain
173426273133273612243SNF2 family N-terminal domain
23323323122Ribosomal protein S7p/S5e
211726231721213113190Ubiquitin-conjugating enzyme
45247435236Isocitrate/isopropylmalate dehydrogenase
22222223118Ribosomal Proteins L2, RNA binding domain
1315Chitinase class I
34534432331Hsp90 protein
23221222117Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
235Chitin recognition protein
1365166712151393Cysteine-rich secretory protein family
2222332218Ribosomal protein S3, C-terminal domain
161311Cupin
1414Annexin
34534259237Eukaryotic-type carbonic anhydrase
224Chalcone and stilbene synthases, N-terminal domain
665355544432-oxoacid dehydrogenases acyltransferase (catalytic domain)
12111121111Catalase
2215Disintegrin
1311107101447UDP-glucoronosyl and UDP-glucosyl transferase
78979986467Aminotransferase class-III
11222222115Ribosomal protein S19
22222223118DNA gyrase B
23523335127Thiamine pyrophosphate enzyme, central domain
13324334124Lyase
1222310Alpha-2-macroglobulin family
23323246227Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22Sodium:neurotransmitter symporter family
23122232219Ferritin-like domain
652110812869162539417Adenylate and Guanylate cyclase catalytic domain
22223322119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Bacterial DNA-binding protein
12222222116Indole-3-glycerol phosphate synthase
111115Aromatic amino acid lyase
7997129812477Pyruvate kinase, barrel domain
353546404036283426320Kinesin motor domain
596051443952496422440DnaJ domain
15171516141714198135Proteasome subunit
3813851012151Major intrinsic protein
22324222120ATP synthase
21444141081470Glycosyl hydrolase family 1
261027195699121233'5'-cyclic nucleotide phosphodiesterase
1211222213Profilin
33333431124Ribosomal protein L22p/L17e
22223322321Ribosomal protein L14p/L23e
88Resolvase, N terminal domain
202037252020162510193Ubiquitin family
11112211111Cofilin/tropomyosin-type actin-binding protein
2226222212114-3-3 protein
11Alkaline phosphatase
89679698163Zinc carboxypeptidase
17312718221619255180Aldo/keto reductase family
333216203439274922272Myb-like DNA-binding domain
3101255541054Glycosyl hydrolases family 32 N-terminal domain
12223122116Ribosomal protein L16p/L10e
1222121112Ribosomal protein S14p/S29e
23191816192218245164FKBP-type peptidyl-prolyl cis-trans isomerase
53445533335Glutathione peroxidase
213
112Dehydrin
1096987912575Flavodoxin
2312322217Calreticulin family
325919Common central domain of tyrosinase
121111119Thymidine kinase
6151012151414184108Aminotransferase class-V
2532532224Ribonucleotide reductase, small chain
557378575565636637549DEAD/DEAH box helicase
831091058359989910651793Helicase conserved C-terminal domain
45745555444Fructose-bisphosphate aldolase class-I
11112111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
12223212116Ribosomal protein L23
462466710348Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111127Potato inhibitor I family
1111221110Ribosomal protein L5
26337667242Pyridoxal-dependent decarboxylase conserved domain
11Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
11Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
13366655338Citrate synthase, C-terminal domain
6666366746GHMP kinases N terminal domain
46546787249Biotin carboxylase, N-terminal domain
112111119Tryptophan synthase alpha chain
911101114141112395Pyridoxal-phosphate dependent enzyme
27211919212522289191NUDIX domain
7131713111210144101pfkB family carbohydrate kinase
11Glycosyl hydrolases family 28
23333333225Ribosomal protein L3
33334344229Ribosomal protein L11, RNA binding domain
13162018151612233136Histidine phosphatase superfamily (branch 1)
42233332123Rubredoxin
11111111210Thymidylate synthase
12142111Lipoxygenase
45443544235ATP synthase alpha/beta chain, C terminal domain
2444334327Calponin homology (CH) domain
23347634133Glutamine amidotransferases class-II
2434223222Phosphoenolpyruvate carboxylase
33432343227Ribosomal protein S15
11121122112'Cold-shock' DNA-binding domain
1113Thaumatin family
34537644238Fructose-1-6-bisphosphatase, N-terminal domain
11111211110Ribonucleotide reductase, all-alpha domain
13313423121Ribosomal protein S2
2111211110SRF-type transcription factor (DNA-binding and dimerisation domain)
71397917912386GATA zinc finger
224Amino acid permease
599913101113483Prolyl oligopeptidase family
2222312216Ribosomal protein L30p/L7e
796664442Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
22244322223Aconitase family (aconitate hydratase)
22211210Glycosyl hydrolase family 10
2342352223Ribosomal protein S5, N-terminal domain
44545447340Nucleoside diphosphate kinase
213Tetraspanin family
33343322225Ribosomal protein S10p/S20e
141221112Arrestin (or S-antigen), N-terminal domain
1111321212Phosphoglucose isomerase
2332632122Carbohydrate phosphorylase
33336333128SecY translocase
12111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22233334224Ribosomal protein L6
44447454137Polyprenyl synthetase
1111111119Hexokinase
69171697107384Dynamin family
112111119Biopterin-dependent aromatic amino acid hydroxylase
111111118Transcription factor TFIID (or TATA-binding protein, TBP)
22RTX calcium-binding nonapeptide repeat (4 copies)
16152018161616265148Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
10139810141513496Biotin-requiring enzyme
23335333328Phosphofructokinase
3232333322Ribosomal protein S17
34323334227FGGY family of carbohydrate kinases, N-terminal domain
11111117FERM central domain
11114Sodium:dicarboxylate symporter family
33MerR family regulatory protein
6866101099670Enoyl-CoA hydratase/isomerase
22223211116Ribosomal protein S9/S16
23321222219Transcription factor TFIIB repeat
653537610247Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
31831098810170Chromo (CHRromatin Organisation MOdifier) domain
11316Phosphatidylinositol-specific phospholipase C, Y domain
11316Phosphatidylinositol-specific phospholipase C, X domain
47734665244D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
67745589253Malic enzyme, N-terminal domain
21211211213PEP-utilising enzyme, mobile domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
212213112Multicopper oxidase
2222312115Granulin
17161414121811213126WW domain
2222222317Ribosomal RNA adenine dimethylase
170179223173136148139168901,426WD domain, G-beta repeat
74566879254Heavy-metal-associated domain
10111Transferrin
8101084767363Adenylate kinase
23322224121Phosphoglucomutase/phosphomannomutase, C-terminal domain
2112211212Ribosomal protein S8
12222221216Ribosomal protein S11
111126LIM domain
11Matrixin
917158111325219128Regulator of chromosome condensation (RCC1) repeat
33434334128Ribosomal protein S13/S18
11114NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
23244333226chorismate binding enzyme
3433433512960s Acidic ribosomal protein
1111111119ATP synthase B/B' CF(0)
1211128CUB domain
3232333423Prenyltransferase and squalene oxidase repeat
2222222115Protein kinase C terminal domain
12115Single-strand binding protein family
11Type II/IV secretion system protein
1211222112S-adenosylmethionine synthetase, N-terminal domain
1020914813811497Bromodomain
66765668353Acyl-CoA dehydrogenase, C-terminal domain
162228201624192111177Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
1413221216Ribonuclease T2 family
21211211112HSF-type DNA-binding
44445434335SRP54-type protein, GTPase domain
77488567456Serine carboxypeptidase
11111111210Ribosomal protein L20
9111489121013793Phosphatidylinositol 3- and 4-kinase
11211111110Transketolase, thiamine diphosphate binding domain
11111122111WHEP-TRS domain
651067558254Inositol monophosphatase family
786889119369Glutaredoxin
11121223114Isocitrate lyase family
34334332328Serine hydroxymethyltransferase
323223116Iron-containing alcohol dehydrogenase
33233323123Ribosomal protein L10
75446665447KOW motif
21221223116Ribosomal protein L34
22212121215Ribosomal protein L33
3443344429RF-1 domain
62462365135Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
24135535643DNA polymerase family A
134Small hydrophilic plant seed protein
1111111119IMP dehydrogenase / GMP reductase domain
12322222117Glucose-6-phosphate dehydrogenase, NAD binding domain
23341827344034369255Protein phosphatase 2C
687788710465Nucleotidyl transferase
4344322224Carbonic anhydrase
49443444238Phosphoribulokinase / Uridine kinase family
101676161612155103Fatty acid desaturase
51013912101012485MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
8913878811274MCM P-loop domain
24432431124Squalene/phytoene synthase
33Bacterial extracellular solute-binding proteins, family 5 Middle
71145145955Bacterial extracellular solute-binding proteins, family 3
1114111012159153100FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
11191914212017238152AMP-binding enzyme
363528394030354121305Chlorophyll A-B binding protein
9117810857671HMG (high mobility group) box
111115NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
111216Cytochrome c oxidase subunit III
74173334234His Kinase A (phospho-acceptor) domain
169101091016266112Armadillo/beta-catenin-like repeat
572622211415212531232Tetratricopeptide repeat
3218263011137137157Ion transport protein
2332332220DNA gyrase/topoisomerase IV, subunit A
22212222116Binding-protein-dependent transport system inner membrane component
25381376Scavenger receptor cysteine-rich domain
46131358233BRCA1 C Terminus (BRCT) domain
14241514212520255163Glycosyl transferases group 1
55524447339Glycosyl transferase family 2
6632222225SAM domain (Sterile alpha motif)
34114214332linker histone H1 and H5 family
21321111214Ribosomal protein L7/L12 C-terminal domain
1111116Nitrogen regulatory protein P-II
23423324124CoA-ligase
34749855146Phosphopantetheine attachment site
43222333123Formyl transferase
7108710111110478Metallopeptidase family M24
904115153016557521358Leucine Rich Repeat
187167613664alpha/beta hydrolase fold
35324533230RNA polymerase Rpb2, domain 6
222332620PB1 domain
2332322320Staphylococcal nuclease homologue
917915101413137107Rab-GTPase-TBC domain
11111117Tudor domain
421054434238Zinc finger, ZZ type
3435223224HRDC domain
13151113121814175118CBS domain
32322433224Ribosomal protein L13
33332434126Ribosomal protein L4/L1 family
88789989268Clp protease
59111710121112289S1 RNA binding domain
11211118HIUase/Transthyretin family
7106586108363AhpC/TSA family
44555646443tRNA synthetases class I (W and Y)
23863235133UvrD/REP helicase N-terminal domain
12182318202017211150Rhodanese-like domain
39610711815271Universal stress protein family
323335342637303813278Acetyltransferase (GNAT) family
12111118SecE/Sec61-gamma subunits of protein translocation complex
111121119C-terminal regulatory domain of Threonine dehydratase
23323344125AIR synthase related protein, N-terminal domain
87766776660tRNA synthetase class II core domain (G, H, P, S and T)
88101189811780SpoU rRNA Methylase family
3211119Phage integrase family
34543456236Tetrapyrrole (Corrin/Porphyrin) Methylases
1121311111Glycosyl transferase family, a/b domain
105343355543PDZ domain
111111118Class II Aldolase and Adducin N-terminal domain
22
213211111Diacylglycerol kinase accessory domain
121331112Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
321818218119164137IQ calmodulin-binding motif
22222223118Phosphoinositide 3-kinase family, accessory domain (PIK domain)
111227Phospholipase D Active site motif
11121118RhoGAP domain
59874745251SPRY domain
33331433225RNA polymerase Rpb1, domain 2
44347444337Guanylate kinase
31321122116Gelsolin repeat
1515101014159114103UBA/TS-N domain
2824122991512215155PHD-finger
24132333122Filamin/ABP280 repeat
81110899912783HECT-domain (ubiquitin-transferase)
1221118Helix-hairpin-helix motif
112BRCA2 repeat
1131112212MSP (Major sperm protein) domain
3443242325Ribonuclease III domain
1423132218Region in Clathrin and VPS
13322222118RanBP1 domain
23211213217PPIC-type PPIASE domain
3222223218Zn-finger in Ran binding protein and others
22161211172012189137Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111122210B-box zinc finger
212123213Poly(ADP-ribose) polymerase catalytic domain
2113119Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
6310129484166132F-box domain
213Elongation factor 1 gamma, conserved domain
4334121119Calpain family cysteine protease
15181217161611158128CRAL/TRIO domain
3132659152717273217BTB/POZ domain
130114542Ricin-type beta-trefoil lectin domain
56767665351Voltage gated chloride channel
23922145129Caspase domain
22