PFAM Domains • Trebouxiophyceae
Annotations/GenomesAstpho2Auxeprot1ChlNC64A_1Coc_C169_1Dicre1Picsp_1SymretAf1SymretSc1SymretSp1SymretSw1TotalAnnotation Description
PFAMs
7,9526,9666,6897,7979,7507,19810,0489,9649,95710,06386,384
60444850564758585758536ATPase family associated with various cellular activities (AAA)
57466055765274728073645ABC transporter
433457555546ATP synthase alpha/beta family, nucleotide-binding domain
3339EGF-like domain
21171620202219191919192Elongation factor Tu GTP binding domain
33253533431Helix-loop-helix DNA-binding domain
1323672678660Hsp20/alpha crystallin family
128111097999993Hsp70 protein
12121311121113131313123KH domain
1225Kunitz/Bovine pancreatic trypsin inhibitor domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
123SH2 domain
111115SH3 domain
99TNFR/NGFR cysteine-rich region
664664666656Actin
531111137151114151512294Ankyrin repeat
1212335333338PAN domain
1187887888881ADP-ribosylation factor family
21381029911964Eukaryotic aspartyl protease
22571216517181618136Cyclic nucleotide-binding domain
111111118Cystatin domain
11114Cytochrome b(C-terminal)/b6/petD
213211111114Cytochrome c
324110Double-stranded RNA binding motif
43403311118EF hand
31651164Fe-4S binding domain
228217111126Fibronectin type III domain
11Globin
12361282988977Glutathione S-transferase, C-terminal domain
334332333330Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
31221211114Homeodomain
162222217Kazal-type serine protease inhibitor domain
12216Laminin EGF domain
555644444445lactate/malate dehydrogenase, NAD binding domain
3123222217Ligand-gated ion channel
333323223226Myosin head (motor domain)
2211203832631303131252Cytochrome P450
182106200150200982122072032051,763Protein kinase domain
1591516151015151515140Pyridine nucleotide-disulphide oxidoreductase
189121413913131313127Ras family
1147877677771Response regulator receiver domain
123RNase H
92598884786077737777765RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
336Reverse transcriptase (RNA-dependent DNA polymerase)
213Serpin (serine protease inhibitor)
645633333339Iron/manganese superoxide dismutases, alpha-hairpin domain
11111912111111111111119Subtilase family
1212192221721192120174Sugar (and other) transporter
30262829302933333333304Thioredoxin
111111118Trefoil (P-type) domain
101341191111111411123Trypsin
23211110Thrombospondin type 1 domain
964677777767Tubulin/FtsZ family, GTPase domain
31621222221von Willebrand factor type A domain
710311121127Zinc finger, C2H2 type
5545354557546198Zinc finger, C3HC4 type (RING finger)
15117108591181296Zinc knuckle
112112111112Ribulose bisphosphate carboxylase, small chain
21111111110Protein-tyrosine phosphatase
57224170542354555354483short chain dehydrogenase
23101323191217171819171Zinc-binding dehydrogenase
224221222221Thiolase, N-terminal domain
3121313111020191612129Beta-ketoacyl synthase, N-terminal domain
971510757777812Fe-2S iron-sulfur cluster binding domain
9716888889889Papain family cysteine protease
111211111111Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
756686888870Glutamine amidotransferase class-I
13121111121012111112115TCP-1/cpn60 chaperonin family
112ATP synthase A chain
313533333330Glutamine synthetase, catalytic domain
222222222220Triosephosphate isomerase
13141516161517171916158E1-E2 ATPase
213Photosynthetic reaction centre protein
29263335201520202020238Core histone H2A/H2B/H3/H4
11111117Bacterial regulatory helix-turn-helix protein, lysR family
121111111111Copper binding proteins, plastocyanin/azurin family
11691188988886Alpha amylase, catalytic domain
10881597999993Bacterial transferase hexapeptide (six repeats)
478576667662tRNA synthetases class I (I, L, M and V)
87671171110101188Cyclin, N-terminal domain
112Carboxylesterase family
655575677659DNA polymerase family B
312224222222ATP synthase subunit C
533655555547Peroxidase
11316Beta-lactamase
436752555547C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
11Nitrogenase component 1 type Oxidoreductase
33233933342336363536328Calcineurin-like phosphoesterase
2821022922242325147Cellulase (glycosyl hydrolase family 5)
655564555551tRNA synthetases class II (D, K and N)
37283241372439364036350Mitochondrial carrier protein
11111117recA bacterial DNA recombination protein
17161120171117171717160Aminotransferase class I and II
945744444449Phosphoribosyl transferase domain
21111118Sigma-54 interaction domain
17171819211820212221194Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
222322222221Phosphoglycerate kinase
321222223221Ribosomal protein S4/S9 N-terminal domain
121112111112Ribosomal protein S12/S23
444444444440Chaperonin 10 Kd subunit
177161413613131112122C2 domain
938565888767PH domain
107712231026262329173bZIP transcription factor
1088914814141414113Aldehyde dehydrogenase family
14761278677781Cytochrome b5-like Heme/Steroid binding domain
212322222220Oxidoreductase molybdopterin binding domain
108111013913131313113Oxidoreductase NAD-binding domain
24201927261927272627242SNF2 family N-terminal domain
112112111112Ribosomal protein S7p/S5e
20172324231524232323215Ubiquitin-conjugating enzyme
433443444437Isocitrate/isopropylmalate dehydrogenase
322222222221Ribosomal Proteins L2, RNA binding domain
11Chitinase class I
334343333332Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111121222215Dihydrofolate reductase
11Chitin recognition protein
22813111120Cysteine-rich secretory protein family
111113111112Ribosomal protein S3, C-terminal domain
314253566742Cupin
114211111114Eukaryotic-type carbonic anhydrase
1111116Chalcone and stilbene synthases, N-terminal domain
5545555555492-oxoacid dehydrogenases acyltransferase (catalytic domain)
211421222219Catalase
11Disintegrin
11371920191922111UDP-glucoronosyl and UDP-glucosyl transferase
778785888874Aminotransferase class-III
11122119Ribosomal protein S19
222222222220DNA gyrase B
434434333334Thiamine pyrophosphate enzyme, central domain
343333333331Lyase
524333333332Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
414621222226Ferritin-like domain
1211118319191920113Adenylate and Guanylate cyclase catalytic domain
222222222220ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
1113Bacterial DNA-binding protein
111222222217Indole-3-glycerol phosphate synthase
11Aromatic amino acid lyase
33Photosystem I psaA/psaB protein
655555555551Pyruvate kinase, barrel domain
37142623231724232523235Kinesin motor domain
49454849473948494847469DnaJ domain
21151416161516161716162Proteasome subunit
1065783888871Major intrinsic protein
222222222220ATP synthase
612831333333Glycosyl hydrolase family 1
11223172161818171063'5'-cyclic nucleotide phosphodiesterase
314Protease inhibitor/seed storage/LTP family
111111111110Profilin
333333333330Ribosomal protein L22p/L17e
232223222222Ribosomal protein L14p/L23e
2012122218918201718166Ubiquitin family
111111111110Cofilin/tropomyosin-type actin-binding protein
11111111111014-3-3 protein
11Alkaline phosphatase
733543444441Zinc carboxypeptidase
2412181823922232222193Aldo/keto reductase family
32152627261724272324241Myb-like DNA-binding domain
312351556536Glycosyl hydrolases family 32 N-terminal domain
11212119Ribosomal protein L16p/L10e
11111117Ribosomal protein S14p/S29e
2091615161616161616156FKBP-type peptidyl-prolyl cis-trans isomerase
326333333332Glutathione peroxidase
43310
746875777765Flavodoxin
112211111112Calreticulin family
11Common central domain of tyrosinase
211221222217Thymidine kinase
1188912911121212104Aminotransferase class-V
323322222223Ribonucleotide reductase, small chain
55575757645764636362599DEAD/DEAH box helicase
97758399897994949190891Helicase conserved C-terminal domain
523424222228Fructose-bisphosphate aldolase class-I
111211111111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
221221211216Ribosomal protein L23
233432333228Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111118Potato inhibitor I family
111112111111Ribosomal protein L5
745663676656Pyridoxal-dependent decarboxylase conserved domain
11Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
11Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
342343444435Citrate synthase, C-terminal domain
566555555552GHMP kinases N terminal domain
557676777764Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
912141114814141414124Pyridoxal-phosphate dependent enzyme
20161817171418171818173NUDIX domain
1191091091010111099pfkB family carbohydrate kinase
1112222213Glycosyl hydrolases family 28
343332223328Ribosomal protein L3
332333333329Ribosomal protein L11, RNA binding domain
18671412812121212113Histidine phosphatase superfamily (branch 1)
323221222221Rubredoxin
111131233319Thymidylate synthase
1124444424Lipoxygenase
333326422331ATP synthase alpha/beta chain, C terminal domain
31122222217Calponin homology (CH) domain
434623333334Glutamine amidotransferases class-II
212221222218Phosphoenolpyruvate carboxylase
333233333329Ribosomal protein S15
223353555538'Cold-shock' DNA-binding domain
554534333338Fructose-1-6-bisphosphatase, N-terminal domain
111111111110Ribonucleotide reductase, all-alpha domain
111112111111Ribosomal protein S2
121111119SRF-type transcription factor (DNA-binding and dimerisation domain)
126771291111111298GATA zinc finger
351624Amino acid permease
855775777765Prolyl oligopeptidase family
321222221118Ribosomal protein L30p/L7e
221241445429Histidine phosphatase superfamily (branch 2)
221222224221Aconitase family (aconitate hydratase)
333333333330Ribosomal protein S5, N-terminal domain
523243444435Nucleoside diphosphate kinase
1111116Tetraspanin family
124322222222Ribosomal protein S10p/S20e
11Arrestin (or S-antigen), N-terminal domain
122112111113Phosphoglucose isomerase
222222222220Carbohydrate phosphorylase
332333333329SecY translocase
112Respiratory-chain NADH dehydrogenase, 49 Kd subunit
232332333327Ribosomal protein L6
534444444440Polyprenyl synthetase
211221222217Hexokinase
755674779865Dynamin family
1111111119Biopterin-dependent aromatic amino acid hydroxylase
211121222216Transcription factor TFIID (or TATA-binding protein, TBP)
137151818519171817147Rieske [2Fe-2S] domain
123Proton-conducting membrane transporter
10101210141214141314123Biotin-requiring enzyme
344323222227Phosphofructokinase
333333333330Ribosomal protein S17
433232333329FGGY family of carbohydrate kinases, N-terminal domain
11111117FERM central domain
2121111110Sodium:dicarboxylate symporter family
679868676669Enoyl-CoA hydratase/isomerase
332221222221Ribosomal protein S9/S16
212322222220Transcription factor TFIIB repeat
5510765766663Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
72683898758Chromo (CHRromatin Organisation MOdifier) domain
844773777761D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
533523222229Malic enzyme, N-terminal domain
112PEP-utilising enzyme, mobile domain
1111111111106-phosphogluconate dehydrogenase, C-terminal domain
2212111111Multicopper oxidase
111111111110Granulin
148101310911121110108WW domain
222222222220Ribosomal RNA adenine dimethylase
140111132124130971281261271311,246WD domain, G-beta repeat
456664666655Heavy-metal-associated domain
235Transferrin
745554555550Adenylate kinase
222331333325Phosphoglucomutase/phosphomannomutase, C-terminal domain
121111111111Ribosomal protein S8
111211111111Ribosomal protein S11
111111118LIM domain
10111611131314141414130Regulator of chromosome condensation (RCC1) repeat
222222322221Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
224Photosystem II protein
434233333331chorismate binding enzyme
32344344443560s Acidic ribosomal protein
111112111111ATP synthase B/B' CF(0)
11CUB domain
333332333329Prenyltransferase and squalene oxidase repeat
322221222220Protein kinase C terminal domain
12111111110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
1010813151014141515124Bromodomain
578785888872Acyl-CoA dehydrogenase, C-terminal domain
19111716171319191820169Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
233115111119Ribonuclease T2 family
211131333321HSF-type DNA-binding
444454453340SRP54-type protein, GTPase domain
537562666652Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
12111111110Ribosomal protein L20
12861011812111111100Phosphatidylinositol 3- and 4-kinase
211111111111Transketolase, thiamine diphosphate binding domain
11111117WHEP-TRS domain
455445444443Inositol monophosphatase family
136101099989992Glutaredoxin
41121111113Isocitrate lyase family
233223222223Serine hydroxymethyltransferase
1225Iron-containing alcohol dehydrogenase
433333333331Ribosomal protein L10
357555555550KOW motif
212212121216Ribosomal protein L34
222112221217Ribosomal protein L33
433343444436RF-1 domain
31772777748Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
212232233323DNA polymerase family A
121121211214IMP dehydrogenase / GMP reductase domain
322221222220Glucose-6-phosphate dehydrogenase, NAD binding domain
19202320221620222022204Protein phosphatase 2C
564665666656Nucleotidyl transferase
413242443431Carbonic anhydrase
565464666654Phosphoribulokinase / Uridine kinase family
12761276887881Fatty acid desaturase
976999898983MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
868888888878MCM P-loop domain
432343444435Squalene/phytoene synthase
26222216Bacterial extracellular solute-binding proteins, family 3
14131312151216161517143FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
15141717171817171717166AMP-binding enzyme
22132431261726262726238Chlorophyll A-B binding protein
5657105878869HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
624333323332His Kinase A (phospho-acceptor) domain
183271163757592Armadillo/beta-catenin-like repeat
57145346151614151514259Tetratricopeptide repeat
1227282865658Ion transport protein
222222222220DNA gyrase/topoisomerase IV, subunit A
211111119Binding-protein-dependent transport system inner membrane component
1313Scavenger receptor cysteine-rich domain
846856324349BRCA1 C Terminus (BRCT) domain
17101216201421222222176Glycosyl transferases group 1
1025747434450Glycosyl transferase family 2
21422232321SAM domain (Sterile alpha motif)
2132212215linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
1111111119Nitrogen regulatory protein P-II
233332333429CoA-ligase
21041481312911891Phosphopantetheine attachment site
323332333328Formyl transferase
1111127Cellulose binding domain
1077987998983Metallopeptidase family M24
698965521228252530359Leucine Rich Repeat
3541839111111102alpha/beta hydrolase fold
332333333329RNA polymerase Rpb2, domain 6
211221223218PB1 domain
223123222221Staphylococcal nuclease homologue
1110791091010101096Rab-GTPase-TBC domain
1111111119Tudor domain
235345444438Zinc finger, ZZ type
311111111112HRDC domain
13101519131012121213129CBS domain
333333333330Ribosomal protein L13
433233333330Ribosomal protein L4/L1 family
987888888880Clp protease
11967121212121212105S1 RNA binding domain
1111111119HIUase/Transthyretin family
11551155555562AhpC/TSA family
433654655546tRNA synthetases class I (W and Y)
2122222215UvrD/REP helicase N-terminal domain
6111110151215151415124Rhodanese-like domain
1199769674674Universal stress protein family
27243524252625252624261Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
12221111112C-terminal regulatory domain of Threonine dehydratase
222232333325AIR synthase related protein, N-terminal domain
979966777774tRNA synthetase class II core domain (G, H, P, S and T)
6566666