PFAM Domains • Oomycota
Annotations/GenomesPhyca11Phyci1Phyinf1Phyra1_1Physo3Sappar1TotalAnnotation Description
PFAMs
11,25111,98213,5849,38512,41916,04374,664
2417147 transmembrane receptor (Secretin family)
224444207 transmembrane sweet-taste receptor of 3 GCPR
525250495766326ATPase family associated with various cellular activities (AAA)
159142148158169138914ABC transporter
54445426ATP synthase alpha/beta family, nucleotide-binding domain
2525317EGF-like domain
181823191924121Elongation factor Tu GTP binding domain
56566331Helix-loop-helix DNA-binding domain
162019172619117Hsp70 protein
997510545KH domain
24435624SH2 domain
13232213SH3 domain
1113TNFR/NGFR cysteine-rich region
151011991367Actin
193354371532721331,142Ankyrin repeat
112242219785PAN domain
13121613132693ADP-ribosylation factor family
9121113131371Eukaryotic aspartyl protease
589468539692461Cyclic nucleotide-binding domain
1225Cadherin domain
22Beta/Gamma crystallin
11Cystatin domain
2112129Cytochrome c
34253320Double-stranded RNA binding motif
10012761211277488EF hand
11121174Fe-4S binding domain
11114Intermediate filament protein
122627102222119Fibronectin type III domain
45116522Globin
212815132510112Glutathione S-transferase, C-terminal domain
898611547Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
46145323Homeodomain
9371716205104Kazal-type serine protease inhibitor domain
1113Laminin B (Domain IV)
112Laminin EGF domain
22322314lactate/malate dehydrogenase, NAD binding domain
282534242439174Myosin head (motor domain)
1112023LNR domain
333026243845196Cytochrome P450
3524323603704005122,426Protein kinase domain
191715172218108Pyridine nucleotide-disulphide oxidoreductase
343641353552233Ras family
45455326Response regulator receiver domain
162321951RNase H
696960656663392RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1236Retroviral aspartyl protease
199117235380Reverse transcriptase (RNA-dependent DNA polymerase)
1111228Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
7813783376Subtilase family
665259766857378Sugar (and other) transporter
111115Sushi repeat (SCR repeat)
253333232539178Thioredoxin
111137Trefoil (P-type) domain
234025294315175Trypsin
13136418Thrombospondin type 1 domain
12111215141276Tubulin/FtsZ family, GTPase domain
16145421von Willebrand factor type A domain
363816445820212Zinc finger, C2H2 type
8210687310218389Zinc finger, C3HC4 type (RING finger)
805314203684422Zinc knuckle
23334318Protein-tyrosine phosphatase
636644526343331short chain dehydrogenase
554441475014251Zinc-binding dehydrogenase
55455832Thiolase, N-terminal domain
23644322Beta-ketoacyl synthase, N-terminal domain
443455252Fe-2S iron-sulfur cluster binding domain
242422242063177Papain family cysteine protease
24437323Enolase, C-terminal TIM barrel domain
1091198855Glutamine amidotransferase class-I
91015991365TCP-1/cpn60 chaperonin family
22222313Glutamine synthetase, catalytic domain
33332216Triosephosphate isomerase
303354263443220E1-E2 ATPase
151615131427100Core histone H2A/H2B/H3/H4
11Bacterial regulatory helix-turn-helix protein, lysR family
1112117Alpha amylase, catalytic domain
12222312Phorbol esters/diacylglycerol binding domain (C1 domain)
9111314121170Bacterial transferase hexapeptide (six repeats)
668115743tRNA synthetases class I (I, L, M and V)
12152017121995Cyclin, N-terminal domain
61111411245Carboxylesterase family
34445424DNA polymerase family B
32333317ATP synthase subunit C
3223111Legume lectin domain
65466330Peroxidase
131211119Beta-lactamase
1113Fibrinogen beta and gamma chains, C-terminal globular domain
595651506258336Calcineurin-like phosphoesterase
192022182335137Cellulase (glycosyl hydrolase family 5)
561666746tRNA synthetases class II (D, K and N)
504848474871312Mitochondrial carrier protein
112127recA bacterial DNA recombination protein
232621212319133Aminotransferase class I and II
996810648Phosphoribosyl transferase domain
202120211922123Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
22232314Phosphoglycerate kinase
22212110Ribosomal protein S4/S9 N-terminal domain
112116Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
375150475761303C2 domain
6711071105108116577PH domain
5713841148bZIP transcription factor
202117222316119Aldehyde dehydrogenase family
17141311131785Cytochrome b5-like Heme/Steroid binding domain
43323116Oxidoreductase molybdopterin binding domain
12161211181382Oxidoreductase NAD-binding domain
232525202728148SNF2 family N-terminal domain
1111127Ribosomal protein S7p/S5e
201820182121118Ubiquitin-conjugating enzyme
33333318Isocitrate/isopropylmalate dehydrogenase
1111217Ribosomal Proteins L2, RNA binding domain
21312312Chitinase class I
34332318Hsp90 protein
22122211Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
22212312Dihydrofolate reductase
313529214214172Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
11Cupin
12812811657Annexin
1910131018474Eukaryotic-type carbonic anhydrase
765665352-oxoacid dehydrogenases acyltransferase (catalytic domain)
33235218Catalase
2020Disintegrin
22622317UDP-glucoronosyl and UDP-glucosyl transferase
665106538Aminotransferase class-III
1111116Ribosomal protein S19
22322213DNA gyrase B
1111116Thiamine pyrophosphate enzyme, central domain
33333419Lyase
44454425Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
6412441646Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1121117Orotidine 5'-phosphate decarboxylase / HUMPS family
22222212ATP:guanido phosphotransferase, C-terminal catalytic domain
1111116Indole-3-glycerol phosphate synthase
22212211Aromatic amino acid lyase
765915446Pyruvate kinase, barrel domain
555658555970353Kinesin motor domain
454143504552276DnaJ domain
15151615151894Proteasome subunit
25322129356148Major intrinsic protein
1111116ATP synthase
1614211619490Glycosyl hydrolase family 1
91211111316723'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
22222212Ribosomal protein L22p/L17e
1111217Ribosomal protein L14p/L23e
211920192528132Ubiquitin family
43243319Cofilin/tropomyosin-type actin-binding protein
111114914-3-3 protein
2321210Alkaline phosphatase
7988102062Zinc carboxypeptidase
28342429338156Aldo/keto reductase family
657440606570374Myb-like DNA-binding domain
6333217Glycosyl hydrolases family 32 N-terminal domain
134Ribosomal protein L16p/L10e
111115Ribosomal protein S14p/S29e
13121512121377FKBP-type peptidyl-prolyl cis-trans isomerase
76767639Glutathione peroxidase
22228
182171520788Flavodoxin
11
12532215Calreticulin family
59142101858Common central domain of tyrosinase
1112117Thymidine kinase
1012114131464Aminotransferase class-V
21235215Ribonucleotide reductase, small chain
515057485062318DEAD/DEAH box helicase
838679838890509Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22332113Ribosomal protein L23
55555631Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11114Ribosomal protein L5
64265730Pyridoxal-dependent decarboxylase conserved domain
1121128Citrate synthase, C-terminal domain
76686538GHMP kinases N terminal domain
76766638Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
17131712151589Pyridoxal-phosphate dependent enzyme
17121614151892NUDIX domain
66536733pfkB family carbohydrate kinase
19252316262111Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22221211Ribosomal protein L11, RNA binding domain
202121141718111Histidine phosphatase superfamily (branch 1)
1211117Thymidylate synthase
23415722Lipoxygenase
33334521ATP synthase alpha/beta chain, C terminal domain
6811761048Calponin homology (CH) domain
44334220Glutamine amidotransferases class-II
22222212Ribosomal protein S15
1111116'Cold-shock' DNA-binding domain
101221236Thaumatin family
23122212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
111115Ribosomal protein S2
1111116SRF-type transcription factor (DNA-binding and dimerisation domain)
11GATA zinc finger
23272212811112Amino acid permease
65554833Prolyl oligopeptidase family
1111116Ribosomal protein L30p/L7e
1115149121980Histidine phosphatase superfamily (branch 2)
33333318Aconitase family (aconitate hydratase)
6747529Glycosyl hydrolase family 10
10177718564Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
55645833Nucleoside diphosphate kinase
5612471246Tetraspanin family
111115Galactoside-binding lectin
11114Ribosomal protein S10p/S20e
49339836Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111138SecY translocase
1111116Ribosomal protein L6
33333419Polyprenyl synthetase
45736732Dynamin family
1111127Biopterin-dependent aromatic amino acid hydroxylase
33333318Transcription factor TFIID (or TATA-binding protein, TBP)
45363425Rieske [2Fe-2S] domain
11Proton-conducting membrane transporter
1111139131370Biotin-requiring enzyme
1111116Phosphofructokinase
31243215Ribosomal protein S17
1124Hydroxymethylglutaryl-coenzyme A reductase
45344424FGGY family of carbohydrate kinases, N-terminal domain
11FERM central domain
89111194391Sodium:dicarboxylate symporter family
101291081362Enoyl-CoA hydratase/isomerase
22222414Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
55665734Cytidine and deoxycytidylate deaminase zinc-binding region
135691021309274Chromo (CHRromatin Organisation MOdifier) domain
11Phosphatidylinositol-specific phospholipase C, Y domain
11Phosphatidylinositol-specific phospholipase C, X domain
12881013960D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
36214319Malic enzyme, N-terminal domain
2222513PEP-utilising enzyme, mobile domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
48477333Multicopper oxidase
365851526066323WW domain
22321313Ribosomal RNA adenine dimethylase
1521851711671721991,046WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
79989648Heavy-metal-associated domain
7712771353Adenylate kinase
22332315Phosphoglucomutase/phosphomannomutase, C-terminal domain
1111127Ribosomal protein S8
1111116Ribosomal protein S11
12222110LIM domain
112Matrixin
293136143044184Regulator of chromosome condensation (RCC1) repeat
1111116Ribosomal protein S13/S18
22222313chorismate binding enzyme
5455542860s Acidic ribosomal protein
33533623Prenyltransferase and squalene oxidase repeat
101351911967Protein kinase C terminal domain
1211117S-adenosylmethionine synthetase, N-terminal domain
242021182424131Bromodomain
10111117101170Acyl-CoA dehydrogenase, C-terminal domain
272525242638165Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
54555933Ribonuclease T2 family
171517162251138HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
162020141822110Serine carboxypeptidase
1111127Ribosomal protein L20
232425232332150Phosphatidylinositol 3- and 4-kinase
1111127Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
13332315WHEP-TRS domain
22232314Inositol monophosphatase family
11
101088121765Glutaredoxin
1211319Isocitrate lyase family
22223213Serine hydroxymethyltransferase
1111127Iron-containing alcohol dehydrogenase
22232213Ribosomal protein L10
44284224KOW motif
1111116Ribosomal protein L34
1121117Ribosomal protein L33
23233316RF-1 domain
55425223Sodium:solute symporter family
1121117Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
33343218IMP dehydrogenase / GMP reductase domain
2111139Glucose-6-phosphate dehydrogenase, NAD binding domain
35225219ROK family
242830252137165Protein phosphatase 2C
44543424Nucleotidyl transferase
43323520Carbonic anhydrase
111126Phosphoribulokinase / Uridine kinase family
9891581160Fatty acid desaturase
67656737MutS domain V
1111116Delta-aminolevulinic acid dehydratase
1121139Arginase family
148898855MCM P-loop domain
123Squalene/phytoene synthase
162016172025114FHA domain
353934283347216AMP-binding enzyme
111115G-protein alpha subunit
69568640HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
33243116His Kinase A (phospho-acceptor) domain
193619214615156Armadillo/beta-catenin-like repeat
768643878347422Tetratricopeptide repeat
11Papillomavirus helicase
397641417981357Ion transport protein
22322213DNA gyrase/topoisomerase IV, subunit A
11Death domain
913108111162BRCA1 C Terminus (BRCT) domain
8911582465Glycosyl transferases group 1
33323418Glycosyl transferase family 2
781111101158SAM domain (Sterile alpha motif)
22332214linker histone H1 and H5 family
11121410Ribosomal protein L7/L12 C-terminal domain
14913713258Pectate lyase
1111116Urease, gamma subunit
33323317CoA-ligase
44735629Phosphopantetheine attachment site
22212211Formyl transferase
12101010111366Metallopeptidase family M24
82115218611934457Leucine Rich Repeat
45428314915190alpha/beta hydrolase fold
33343319RNA polymerase Rpb2, domain 6
67778843PB1 domain
22423316Staphylococcal nuclease homologue
152228172138141Rab-GTPase-TBC domain
1111116Tudor domain
6171214141982Zinc finger, ZZ type
13323315HRDC domain
201812181718103CBS domain
22222111Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
45534526S1 RNA binding domain
1111116HIUase/Transthyretin family
101271212962AhpC/TSA family
44454526tRNA synthetases class I (W and Y)
1011151091166Rhodanese-like domain
1113Universal stress protein family
363522273226178Acetyltransferase (GNAT) family
1121128SecE/Sec61-gamma subunits of protein translocation complex
22222111C-terminal regulatory domain of Threonine dehydratase
33343319AIR synthase related protein, N-terminal domain
1010810111059tRNA synthetase class II core domain (G, H, P, S and T)
451645741SpoU rRNA Methylase family
8236322Phage integrase family
33332115Tetrapyrrole (Corrin/Porphyrin) Methylases
1112117Glycosyl transferase family, a/b domain
91315331813101PDZ domain
1111127Class II Aldolase and Adducin N-terminal domain
1111127Diacylglycerol kinase accessory domain
6810771351Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
222219Fes/CIP4, and EFC/F-BAR homology domain
59108518210969478IQ calmodulin-binding motif
444341130Phosphoinositide 3-kinase family, accessory domain (PIK domain)
161531620373Phospholipase D Active site motif
5613671855Regulator of G protein signaling domain
33333318GTPase-activator protein for Ras-like GTPase
33432419RasGEF domain
111115RasGEF N-terminal motif
58737939RhoGAP domain
12222312RhoGEF domain
7141610142182SPRY domain
23333317RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
44344322Gelsolin repeat
10201713221799UBA/TS-N domain
284023353824188PHD-finger
32423519Filamin/ABP280 repeat
112GGL domain
293036262948198HECT-domain (ubiquitin-transferase)
66254326Helix-hairpin-helix motif
1113BRCA2 repeat
423331025MSP (Major sperm protein) domain
35134420Ribonuclease III domain
12422314Region in Clathrin and VPS
13333417RanBP1 domain
44444222PPIC-type PPIASE domain
7141111111266Zn-finger in Ran binding protein and others
213116272824147Zinc finger C-x8-C-x5-C-x3-H type (and similar)
146541232B-box zinc finger
54235524Poly(ADP-ribose) polymerase catalytic domain
11411614Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
101931918574F-box domain
222219Elongation factor 1 gamma, conserved domain
456561137Calpain family cysteine protease
810910101966CRAL/TRIO domain
10121110131470BTB/POZ domain
51259971111Ricin-type beta-trefoil lectin domain
1011999957Voltage gated chloride channel
11Caspase domain
1014461549GDSL-like Lipase/Acylhydrolase
1121117Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
394945455276306ABC transporter transmembrane region
198122219151447Integrase core domain
56856737FAD binding domain
13116Condensation domain
1111127S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11114ribosomal L5P family C-terminus
778871047Insulinase (Peptidase family M16)
55655632Dehydrogenase E1 component
111115Lumazine binding domain
771076845Elongation factor G C-terminus
33333419HMGL-like
454441031DnaJ central domain
1122511Sulfotransferase domain
2136Starch binding domain
22322516Ribosomal protein L1p/L10e family
1213219121380Cation transporting ATPase, C-terminus
12141512131783Cation transporter/ATPase, N-terminus
1112218dUTPase
33333318Aconitase C-terminal domain
78977947Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
22453420Acyl transferase domain
1111116Urease beta subunit
22113110Dihydrodipicolinate synthetase family
404234464422228haloacid dehalogenase-like hydrolase
1111116Glycosyl hydrolases family 2
222221929Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
111115Translation initiation factor IF-3, C-terminal domain
1124Acylphosphatase
1212219Adenylosuccinate synthetase
1111127Asparaginase, N-terminal
4434621Peptidase S24-like
33333318Inorganic pyrophosphatase
44Glycosyl hydrolases family 16
27232126659171NADH:flavin oxidoreductase / NADH oxidase family
222222123-hydroxyacyl-CoA dehydrogenase, C-terminal domain
22Glycosyl hydrolase family 20, catalytic domain
33243419HhH-GPD superfamily base excision DNA repair protein
13212211AIR carboxylase
5810108849GMC oxidoreductase
34423723Asparagine synthase
663354669Fungal cellulose binding domain
23222213EF-1 guanine nucleotide exchange domain
22422517Homoserine dehydrogenase
22Flavin-binding monooxygenase-like
33332418tRNA synthetases class I (E and Q), catalytic domain
22222212tRNA synthetases class I (R)
55558533XPG N-terminal domain
81057101252Metallo-beta-lactamase superfamily
4313213F5/8 type C domain
77877945Choline/Carnitine o-acyltransferase
11211511Putative esterase
1111116Ferrochelatase
441944237Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111127Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
34434321RNB domain
571131036Dioxygenase
11DIX domain
112CNH domain
76426631Diacylglycerol kinase catalytic domain
172019122129118Dual specificity phosphatase, catalytic domain
2222210MyTH4 domain
55
1113P21-Rho-binding domain
4964886763133464PX domain
12126Ras association (RalGDS/AF-6) domain
45555529UBX domain
22232213VHS domain
22222818Phosphoinositide 3-kinase C2
35344423DAHP synthetase I family
12148PI3-kinase family, ras-binding domain
46356529Carbon-nitrogen hydrolase
22N-acetyltransferase
26825326Prephenate dehydratase
66466533Syntaxin
44234219Pumilio-family RNA binding repeat
57546532Histone-like transcription factor (CBF/NF-Y) and archaeal histone
22234215Pterin binding enzyme
22212211ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
33333318impB/mucB/samB family
11215
1111127Ribosomal L15
11411311Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111127Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1121319Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
6734727Glycosyl hydrolase family 7
11114AP2 domain
11Ring hydroxylating alpha subunit (catalytic domain)
78877744RNA pseudouridylate synthase
81081181560Histone deacetylase domain
12227Glycosyltransferase family 10 (fucosyltransferase) C-term
101251011351POT family
34634424PWWP domain
1166638388228368SET domain
12122816Isochorismatase family
1221118Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
54556631XPG I-region
1111116Acetokinase family
33454221DNA photolyase
36535224Nitroreductase family
32232618Cytosol aminopeptidase family, catalytic domain
121622132588Sulfatase
224242166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
46766938Acyl CoA binding protein
55535528Cullin family
111115Elongation factor TS
33333419FAD binding domain
11O-methyltransferase domain
162419122030121EamA-like transporter family
655521
10101010101666ThiF family
1111116Ribosomal family S4e
22212312Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
58578740Ammonium Transporter Family
14171311231088Sulfate permease family
112MATH domain
22223112Uncharacterized protein family UPF0004
123129Dehydratase family
1111116Transaldolase/Fructose-6-phosphate aldolase
23323316Mechanosensitive ion channel
11321210GTP cyclohydrolase II
222222123,4-dihydroxy-2-butanone 4-phosphate synthase
55545731Adaptor complexes medium subunit family
565541136Exonuclease
1111138Dipeptidyl peptidase IV (DPP IV) N-terminal region
112NB-ARC domain
22Lamin Tail Domain
23272225238128Glycosyl hydrolase family 3 N terminal domain
121116Ribosomal protein L44
1113Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
1211128FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
22222111Nucleosome assembly protein (NAP)
66645734Synaptobrevin
111115GMP synthase C terminal domain
33343218Adenosine/AMP deaminase
182142262925161Elicitin
11Barwin family
77667942Oxidoreductase FAD-binding domain
2231210Thioesterase domain
22222212Histidine biosynthesis protein
99989448Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
42322215Carbamoyl-phosphate synthase small chain, CPSase domain
35354121PAS fold
22
44333219Probable molybdopterin binding domain
88879747Sec1 family
22222212GDP dissociation inhibitor
911912141065Sodium/hydrogen exchanger family
33422216RNA polymerase Rpb3/RpoA insert domain
23543724Inward rectifier potassium channel transmembrane domain
44444222Initiation factor 2 subunit family