PFAM Domains • Archaeplastida
Annotations/GenomesAraly1Astpho2Auxeprot1Batpra1ChlNC64A_1Chlre4Chocri1Chrzof1Coc_C169_1Cyamer1Dicre1Dunsal1Galsul1Gonpec1MicpuC3v2MicpuN3v2Monneg1Ost9901_3OstRCC809_2Ostta1115_2Ostta4221_3Phypa1_1Picsp_1Poptr1_1Porumb1Rapsub1SceoblEN4_1Selmo1Sobl393_1Sorbi1SymretAf1SymretSc1SymretSp1SymretSw1Volca1TotalAnnotation Description
PFAMs
7,9526,9667,8876,6897,5656,92712,0577,7975,1139,75010,9587,19412,1488,0298,40910,4015,4773,1168,2817,79616,7627,19831,2487,04111,19710,78215,05513,70423,79110,0489,9649,95710,0633,419340,741
117 transmembrane receptor (Secretin family)
6044504852496250345661446158575646295551934714457625779708758585758371,987ATPase family associated with various cellular activities (AAA)
5746436064487355317657468252539047234845112522065982751358913074728073302,365ABC transporter
436346644558455653134971366565955552191ATP synthase alpha/beta family, nucleotide-binding domain
313931111253122139EGF-like domain
21171916172325201920252121212119211423213822402121212427311919191910735Elongation factor Tu GTP binding domain
3312825513422213121194160514651505334528Helix-loop-helix DNA-binding domain
1322365862716373443144242439651873367861278Hsp20/alpha crystallin family
128911889105912815111011104810217317991683099995367Hsp70 protein
12121713134131121213912333310211422232011556158181331131313134532KH domain
1212112211115Kunitz/Bovine pancreatic trypsin inhibitor domain
369Methyl-accepting chemotaxis protein (MCP) signalling domain
211222142111323Ribulose bisphosphate carboxylase large chain, catalytic domain
121217SH2 domain
111118111145136SH3 domain
9313117TNFR/NGFR cysteine-rich region
667457126666874486477164198951081866662249Actin
5311511110734637155419991111265718710581121550211459345814151512281,466Ankyrin repeat
1212122333141153623865733331175PAN domain
1188716101186812151410111175773172481211121422888811376ADP-ribosylation factor family
2113341831019122142332526842426782991191323Eukaryotic aspartyl protease
22511718324121161622829321611515151553532014122723171816183514Cyclic nucleotide-binding domain
12148Beta/Gamma crystallin
11121111259213111111147Cystatin domain
13111111117115114133Cytochrome b(C-terminal)/b6/petD
172313Cytochrome b/b6/petB
21234112111112211115112111414111163Cytochrome c
322124213412121110332113231115Double-stranded RNA binding motif
43140101233143989363518121281212319441571351,117EF hand
3116611522113314213119121271814Fe-4S binding domain
11Fibronectin type II domain
2218452134237211157413546211111100Fibronectin type III domain
112111242121221Globin
1235695141238891112119336620258113931107198891405Glutathione S-transferase, C-terminal domain
33443223334235533333142924355733332129Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
313212231111171445342763117137111226Homeodomain
1167223313215132222251Kazal-type serine protease inhibitor domain
711322218Kringle domain
112Laminin B (Domain IV)
121211111213Laminin EGF domain
5565536674535554554514419666871244444200lactate/malate dehydrogenase, NAD binding domain
152762135191254Lectin C-type domain
2317121346112348216627222222157Ligand-gated ion channel
332333323132291111831262441222322108Myosin head (motor domain)
21115LNR domain
2211102035174938532348381212521061110706321153345196563313130313161,634Cytochrome P450
2114Phospholipase A2
182106882004231412571505520024678584122134304102509795626981,6451932822225622831,2152122072032051889,755Protein kinase domain
1599151611181691511131812147118108241028121315151927151515158476Pyridine nucleotide-disulphide oxidoreductase
18912121491914111314113013151512512136097391817231954131313137612Ras family
1149712210871421413118841387179829828134567773476Response regulator receiver domain
112221222111130262178RNase H
925950888538978422788863818379945926475217860318261188914710324077737777382,986RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
319382323661312231442186Reverse transcriptase (RNA-dependent DNA polymerase)
211412413126151751Serpin (serine protease inhibitor)
223331337875451Copper/zinc superoxide dismutase (SODC)
641542463352411311143535535333332107Iron/manganese superoxide dismutases, alpha-hairpin domain
11115191041912111712186382232181179173057608954111111112663Subtilase family
121291916222225218707762815412113679412528423795211921207761Sugar (and other) transporter
2114Sushi repeat (SCR repeat)
302639282618352910303219394344342516373652296028423735474733333333111,116Thioredoxin
11111511111125Trefoil (P-type) domain
1012349511111947141019342210111036251011119111114115343Trypsin
2432131111131125Thrombospondin type 1 domain
96741051067791111881084773273139960101877779370Tubulin/FtsZ family, GTPase domain
31653221111121169721537222279von Willebrand factor type A domain
72108182351233131710111721154411350214312115584Zinc finger, C2H2 type
55445379265435427747774816541545386177146103537546281,628Zinc finger, C3HC4 type (RING finger)
1511017121281028164141717910258209514011111840111289118126825Zinc knuckle
11322111122322321225271212211111382Ribulose bisphosphate carboxylase, small chain
213151113311213121416321111255Protein-tyrosine phosphatase
57222441361658701954412435383546191022235023128284642615810354555354171,462short chain dehydrogenase
2310813136222371916161310101712111935126781215481845171718195595Zinc-binding dehydrogenase
221422223223211311214152225152222377Thiolase, N-terminal domain
312313424132111125106128251471092610755201916121271Beta-ketoacyl synthase, N-terminal domain
9771513610106711611910885672152771211201522777793482Fe-2S iron-sulfur cluster binding domain
9771615278841681038951091284794336864588984529Papain family cysteine protease
111115121111111311114153224231111158Enolase, C-terminal TIM barrel domain
11Pilin (bacterial filament)
2114113114Cytochrome C and Quinol oxidase polypeptide I
11111131111112118Cytochrome C oxidase subunit II, periplasmic domain
756657765889777364861061767512111388885251Glutamine amidotransferase class-I
131211111212131112121412151211211481111271031121311171221121111128456TCP-1/cpn60 chaperonin family
121111141412222ATP synthase A chain
31135445133153351121123924444533332116Glutamine synthetase, catalytic domain
2232121212111322423262421213222268Triosephosphate isomerase
131415152017241610161911181315221581714261561202422283332171719165647E1-E2 ATPase
222229231126Photosynthetic reaction centre protein
2926163312412313511206811126161619125101349154672364023276020202020441,125Core histone H2A/H2B/H3/H4
1211114291111145Bacterial regulatory helix-turn-helix protein, lysR family
12111111112211111312111111111237Copper binding proteins, plastocyanin/azurin family
11679851011681096151679888158115813111716988810324Alpha amylase, catalytic domain
1113Phorbol esters/diacylglycerol binding domain (C1 domain)
10878126101589715816109866618757713917101599998381Bacterial transferase hexapeptide (six repeats)
4768567567685559916696157661081366764230tRNA synthetases class I (I, L, M and V)
87961431677117102278151058830756318211626471110101112466Cyclin, N-terminal domain
111122111112Carboxylesterase family
6535447547556444323395425356567763162DNA polymerase family B
3142422222424234419394962242522222113ATP synthase subunit C
33473983
1221122650111452135Legume lectin domain
133111112142223Sigma-70 factor, region 1.2
5343631262579435931445951203410981213455553566Peroxidase
111144Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
11212312321122412532445Beta-lactamase
4376510715619128653565256831055555173C-5 cytosine-specific DNA methylase
113182319NADH dehydrogenase
134Fibrinogen beta and gamma chains, C-terminal globular domain
121217Nitrogenase component 1 type Oxidoreductase
332324392514253313342318223030232015191954237092827453864363635368991Calcineurin-like phosphoesterase
28222131022251151346913113144161122242325273Cellulase (glycosyl hydrolase family 5)
65655685666856697466741266696855555210tRNA synthetases class II (D, K and N)
372837324427484131375338434347484216393989249039404460516239364036221,442Mitochondrial carrier protein
1111311111111111611111130recA bacterial DNA recombination protein
171611111117222016172419191414291271512241149172422162234171717177617Aminotransferase class I and II
946595774461168849266164203861282144443243Phosphoribosyl transferase domain
2111123114112111125Sigma-54 interaction domain
171726182413231972126172427281723726263418401623272122292021222116736Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
156Ribosome inactivating protein
22222213123232262228262223332222284Phosphoglycerate kinase
32311222121222231152725332415223281Ribosomal protein S4/S9 N-terminal domain
122123211122211311615282323241111172Ribosomal protein S12/S23
21627Bacterial regulatory helix-turn-helix proteins, AraC family
44444244244243344133104524476744441133Chaperonin 10 Kd subunit
177716281326142131242016191011488746116201312481986131311126704C2 domain
93285275267247725233245292641262088872232PH domain
107576717124234131099853683610671115919127826262329534bZIP transcription factor
108588511961471911571562971782971011281517141414147377Aldehyde dehydrogenase family
314Fungal Zn(2)-Cys(6) binuclear cluster domain
147196141211128712810222210191320202481811141315162067778440Cytochrome b5-like Heme/Steroid binding domain
213223332232133421225242432652222289Oxidoreductase molybdopterin binding domain
1089118812107131210119914115991691851213111917131313135372Oxidoreductase NAD-binding domain
2420231917223427132626122727303121923234119532133273536392727262712877SNF2 family N-terminal domain
1132223121362113116152173325331111191Ribosomal protein S7p/S5e
2017182321221724172326192319201713614143915622121213331502423232313772Ubiquitin-conjugating enzyme
43234454442642173229313643557