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PFAM Domains • Mamiellophyceae
Annotations/GenomesBatpra1MicpuC3v2MicpuN3v2Ost9901_3OstRCC809_2Ostta1115_2Ostta4221_3TotalAnnotation Description
PFAMs
7,8878,0298,4095,4773,1168,2817,79648,995
50585746295551346ATPase family associated with various cellular activities (AAA)
43525347234845311ABC transporter
6555313441ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
19212121142321140Elongation factor Tu GTP binding domain
12112119Helix-loop-helix DNA-binding domain
234314421Hsp20/alpha crystallin family
9111010481062Hsp70 protein
17333321142223163KH domain
11Kunitz/Bovine pancreatic trypsin inhibitor domain
222214215Ribulose bisphosphate carboxylase large chain, catalytic domain
11SH2 domain
744647739Actin
5911115718710299Ankyrin repeat
14117PAN domain
81011757755ADP-ribosylation factor family
122423317Eukaryotic aspartyl protease
1129321151515118Cyclic nucleotide-binding domain
311117115Cytochrome b(C-terminal)/b6/petD
222111110Cytochrome c
122117Double-stranded RNA binding motif
19893351812248EF hand
133421144Fe-4S binding domain
11Fibronectin type II domain
123211111Fibronectin type III domain
1247Globin
51211336646Glutathione S-transferase, C-terminal domain
455333326Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
311744534Homeodomain
112Kazal-type serine protease inhibitor domain
711322218Kringle domain
112Laminin B (Domain IV)
112Laminin EGF domain
655554535lactate/malate dehydrogenase, NAD binding domain
2114Ligand-gated ion channel
222111110Myosin head (motor domain)
213LNR domain
101212106111071Cytochrome P450
88122134102509795688Protein kinase domain
9121411810872Pyridine nucleotide-disulphide oxidoreductase
121315125121382Ras family
913118413866Response regulator receiver domain
1221118RNase H
50837959264752396RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
11Serpin (serine protease inhibitor)
233313318Copper/zinc superoxide dismutase (SODC)
1111116Iron/manganese superoxide dismutases, alpha-hairpin domain
586223228Subtilase family
976154121164Sugar (and other) transporter
22Sushi repeat (SCR repeat)
39434425163736240Thioredoxin
21410342237Trypsin
43119Thrombospondin type 1 domain
788847749Tubulin/FtsZ family, GTPase domain
1214von Willebrand factor type A domain
213171011145Zinc finger, C2H2 type
47477481654228Zinc finger, C3HC4 type (RING finger)
1017171025869Zinc knuckle
332321216Ribulose bisphosphate carboxylase, small chain
1113Protein-tyrosine phosphatase
24383519102223171short chain dehydrogenase
8101012111961Zinc-binding dehydrogenase
11111218Thiolase, N-terminal domain
31068251448Beta-ketoacyl synthase, N-terminal domain
79108567522Fe-2S iron-sulfur cluster binding domain
78109510958Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
246Cytochrome C and Quinol oxidase polypeptide I
134Cytochrome C oxidase subunit II, periplasmic domain
677648644Glutamine amidotransferase class-I
111211148111178TCP-1/cpn60 chaperonin family
246ATP synthase A chain
133112112Glutamine synthetase, catalytic domain
332423219Triosephosphate isomerase
151315158171497E1-E2 ATPase
224Photosynthetic reaction centre protein
161616125101388Core histone H2A/H2B/H3/H4
11Bacterial regulatory helix-turn-helix protein, lysR family
12211119Copper binding proteins, plastocyanin/azurin family
71516988871Alpha amylase, catalytic domain
71610866659Bacterial transferase hexapeptide (six repeats)
655916638tRNA synthetases class I (I, L, M and V)
9781058855Cyclin, N-terminal domain
21115Carboxylesterase family
344323322DNA polymerase family B
423419326ATP synthase subunit C
22112210Legume lectin domain
11111218Sigma-70 factor, region 1.2
435314424Peroxidase
311229Beta-lactamase
7128535646C-5 cytosine-specific DNA methylase
134NADH dehydrogenase
24303020151919157Calcineurin-like phosphoesterase
2113411Cellulase (glycosyl hydrolase family 5)
666746641tRNA synthetases class II (D, K and N)
37434742163939263Mitochondrial carrier protein
111115recA bacterial DNA recombination protein
111414127151285Aminotransferase class I and II
688926645Phosphoribosyl transferase domain
314Sigma-54 interaction domain
2627282372626163Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
22222212Phosphoglycerate kinase
322115216Ribosomal protein S4/S9 N-terminal domain
211116113Ribosomal protein S12/S23
433413321Chaperonin 10 Kd subunit
716191148873C2 domain
277523329PH domain
599536845bZIP transcription factor
557629741Aldehyde dehydrogenase family
19222219132020135Cytochrome b5-like Heme/Steroid binding domain
333212216Oxidoreductase molybdopterin binding domain
9991159961Oxidoreductase NAD-binding domain
2327302192323156SNF2 family N-terminal domain
311116114Ribosomal protein S7p/S5e
1819201361414104Ubiquitin-conjugating enzyme
22132212Isocitrate/isopropylmalate dehydrogenase
322217219Ribosomal Proteins L2, RNA binding domain
444433426Hsp90 protein
222212213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
11Cysteine-rich secretory protein family
31116113Ribosomal protein S3, C-terminal domain
111115Annexin
112Eukaryotic-type carbonic anhydrase
4445344282-oxoacid dehydrogenases acyltransferase (catalytic domain)
2414314Disintegrin
346524428Aminotransferase class-III
311117115Ribosomal protein S19
222223215DNA gyrase B
1111217Thiamine pyrophosphate enzyme, central domain
444424426Lyase
112Alpha-2-macroglobulin family
112Sodium:neurotransmitter symporter family
1112117Ferritin-like domain
21113412Adenylate and Guanylate cyclase catalytic domain
22222212ATP synthase delta (OSCP) subunit
1112117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Bacterial DNA-binding protein
11111218Indole-3-glycerol phosphate synthase
55Photosystem I psaA/psaB protein
688213230Pyruvate kinase, barrel domain
1232391541515132Kinesin motor domain
60808257195359410DnaJ domain
1615161881616105Proteasome subunit
11TNF(Tumour Necrosis Factor) family
112Major intrinsic protein
222221213ATP synthase
11114Glycosyl hydrolase family 1
346222193'5'-cyclic nucleotide phosphodiesterase
3216Protease inhibitor/seed storage/LTP family
11111117Profilin
333323320Ribosomal protein L22p/L17e
31118115Ribosomal protein L14p/L23e
111819645972Ubiquitin family
1111228Cofilin/tropomyosin-type actin-binding protein
32232221614-3-3 protein
112Alkaline phosphatase
266222222Zinc carboxypeptidase
141617107131188Aldo/keto reductase family
18403934162323193Myb-like DNA-binding domain
37111Ribosomal protein L16p/L10e
211318Ribosomal protein S14p/S29e
2133302682123162FKBP-type peptidyl-prolyl cis-trans isomerase
455535128Glutathione peroxidase
2237
666546639Flavodoxin
222111110Calreticulin family
222212213Thymidine kinase
7913437649Aminotransferase class-V
222222214Ribonucleotide reductase, small chain
70656880267072451DEAD/DEAH box helicase
91110116103429296650Helicase conserved C-terminal domain
323333320Fructose-bisphosphate aldolase class-I
1211117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
32215215Ribosomal protein L23
23222213Pyridoxal-dependent decarboxylase, C-terminal sheet domain
31116113Ribosomal protein L5
221322214Pyridoxal-dependent decarboxylase conserved domain
2114Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits
1113Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit
233213216Citrate synthase, C-terminal domain
678656543GHMP kinases N terminal domain
434445428Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
101114108111074Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
1314181881514100NUDIX domain
81113838859pfkB family carbohydrate kinase
11Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
333323320Ribosomal protein L3
333323320Ribosomal protein L11, RNA binding domain
141518105161694Histidine phosphatase superfamily (branch 1)
368323328Rubredoxin
11111117Thymidylate synthase
11Lipoxygenase
5444310333ATP synthase alpha/beta chain, C terminal domain
232221113Calponin homology (CH) domain
477543333Glutamine amidotransferases class-II
1111116Phosphoenolpyruvate carboxylase
333213318Ribosomal protein S15
24334521'Cold-shock' DNA-binding domain
555535533Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
311119117Ribosomal protein S2
11111117SRF-type transcription factor (DNA-binding and dimerisation domain)
9119946654GATA zinc finger
12115Amino acid permease
355113220Prolyl oligopeptidase family
221112211Ribosomal protein L30p/L7e
122112211Histidine phosphatase superfamily (branch 2)
123Respiratory-chain NADH dehydrogenase, 30 Kd subunit
233322217Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
333432321Ribosomal protein S5, N-terminal domain
244313320Nucleoside diphosphate kinase
21115Tetraspanin family
11Galactoside-binding lectin
32224215Ribosomal protein S10p/S20e
123Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
233313318Carbohydrate phosphorylase
333323320SecY translocase
134Respiratory-chain NADH dehydrogenase, 49 Kd subunit
322214216Ribosomal protein L6
454434428Polyprenyl synthetase
455324326Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
99121057961Rieske [2Fe-2S] domain
22Bacterial regulatory proteins, lacI family
11Phytochrome region
3710Proton-conducting membrane transporter
798857751Biotin-requiring enzyme
13322213Phosphofructokinase
33332317Ribosomal protein S17
354334325FGGY family of carbohydrate kinases, N-terminal domain
1113FERM central domain
112Sodium:dicarboxylate symporter family
11MerR family regulatory protein
555559640Enoyl-CoA hydratase/isomerase
322215217Ribosomal protein S9/S16
233313318Transcription factor TFIIB repeat
68776640Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
565325531Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
2111229Phosphatidylinositol-specific phospholipase C, X domain
444334426D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
344535529Malic enzyme, N-terminal domain
222222214PEP-utilising enzyme, mobile domain
211111186-phosphogluconate dehydrogenase, C-terminal domain
1626231261717117WW domain
23222213Ribosomal RNA adenine dimethylase
10816716611657106105825WD domain, G-beta repeat
1124ATP synthase, Delta/Epsilon chain, long alpha-helix domain
677516638Heavy-metal-associated domain
479546540Adenylate kinase
211413214Phosphoglucomutase/phosphomannomutase, C-terminal domain
31116113Ribosomal protein S8
41116114Ribosomal protein S11
13423215LIM domain
81118117111278Regulator of chromosome condensation (RCC1) repeat
322215217Ribosomal protein S13/S18
145NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
246Photosystem II protein
333314320chorismate binding enzyme
34331231960s Acidic ribosomal protein
11111319ATP synthase B/B' CF(0)
11CUB domain
333323320Prenyltransferase and squalene oxidase repeat
13211210Protein kinase C terminal domain
11111117Single-strand binding protein family
11Type II/IV secretion system protein
11121219S-adenosylmethionine synthetase, N-terminal domain
12119126111273Bromodomain
11Bacterial regulatory proteins, tetR family
444526328Acyl-CoA dehydrogenase, C-terminal domain
91213115111172Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
111115Ribonuclease T2 family
14611114HSF-type DNA-binding
444525428SRP54-type protein, GTPase domain
111115Urease alpha-subunit, N-terminal domain
222222214Serine carboxypeptidase
21111219Ribosomal protein L20
898959957Phosphatidylinositol 3- and 4-kinase
11111117Transketolase, thiamine diphosphate binding domain
53311114WHEP-TRS domain
989719851Inositol monophosphatase family
51215236548Glutaredoxin
11Isocitrate lyase family
333334322Serine hydroxymethyltransferase
12111118Iron-containing alcohol dehydrogenase
33323317Ribosomal protein L10
745827639KOW motif
22222212Ribosomal protein L34
22222212Ribosomal protein L33
45434424RF-1 domain
222432217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
233333320DNA polymerase family A
11121118IMP dehydrogenase / GMP reductase domain
33311112Glucose-6-phosphate dehydrogenase, NAD binding domain
1111116ROK family
151515147141494Protein phosphatase 2C
455335530Nucleotidyl transferase
1111116Carbonic anhydrase
333433322Phosphoribulokinase / Uridine kinase family
33Transcriptional regulatory protein, C terminal
111514129141388Fatty acid desaturase
71010849957MutS domain V
11111117Delta-aminolevulinic acid dehydratase
1124Arginase family
898949956MCM P-loop domain
333324422Squalene/phytoene synthase
8151193121270FHA domain
123NADH-ubiquinone/plastoquinone oxidoreductase chain 6
121516116171592AMP-binding enzyme
28242821151924159Chlorophyll A-B binding protein
81211938859HMG (high mobility group) box
134NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
134Cytochrome c oxidase subunit III
276115224His Kinase A (phospho-acceptor) domain
21111222232Armadillo/beta-catenin-like repeat
16626753231416251Tetratricopeptide repeat
922291351618112Ion transport protein
222222214DNA gyrase/topoisomerase IV, subunit A
33Binding-protein-dependent transport system inner membrane component
11HlyD membrane-fusion protein of T1SS
31412557753BRCA1 C Terminus (BRCT) domain
1816191361615103Glycosyl transferases group 1
1479635448Glycosyl transferase family 2
357112221SAM domain (Sterile alpha motif)
22116linker histone H1 and H5 family
222211212Ribosomal protein L7/L12 C-terminal domain
112Nitrogen regulatory protein P-II
111115Urease, gamma subunit
222211212CoA-ligase
5896371149Phosphopantetheine attachment site
222213214Formyl transferase
1099859959Metallopeptidase family M24
3549825867201Leucine Rich Repeat
227271571180alpha/beta hydrolase fold
334426325RNA polymerase Rpb2, domain 6
22EAL domain
564244429PB1 domain
122311212Staphylococcal nuclease homologue
947649948Rab-GTPase-TBC domain
11121118Tudor domain
6910736647Zinc finger, ZZ type
211228HRDC domain
1322211641314103CBS domain
33334319Ribosomal protein L13
333313319Ribosomal protein L4/L1 family
9888412857Clp protease
11101299111173S1 RNA binding domain
112HIUase/Transthyretin family
335523324AhpC/TSA family
444524427tRNA synthetases class I (W and Y)
1111127UvrD/REP helicase N-terminal domain
218852181880Rhodanese-like domain
78624532Universal stress protein family
25343822112829187Acetyltransferase (GNAT) family
2111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
211113211AIR synthase related protein, N-terminal domain
799967754tRNA synthetase class II core domain (G, H, P, S and T)
8121210210963SpoU rRNA Methylase family
1124Phage integrase family
455434429Tetrapyrrole (Corrin/Porphyrin) Methylases
11111319Glycosyl transferase family, a/b domain
44TonB dependent receptor
2910933339PDZ domain
11111218Class II Aldolase and Adducin N-terminal domain
22
244212217Diacylglycerol kinase accessory domain
211112210Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
844469533118IQ calmodulin-binding motif
11111117Phosphoinositide 3-kinase family, accessory domain (PIK domain)
112Phospholipase D Active site motif
213RhoGAP domain
22332214SPRY domain
433316323RNA polymerase Rpb1, domain 2
133112112Guanylate kinase
347333326Gelsolin repeat
8221914791089UBA/TS-N domain
20292821101312133PHD-finger
45613322Filamin/ABP280 repeat
41010816645HECT-domain (ubiquitin-transferase)
252421117Helix-hairpin-helix motif
111115BRCA2 repeat
12211119MSP (Major sperm protein) domain
111227Ribonuclease III domain
11115413Region in Clathrin and VPS
322212315RanBP1 domain
433322320PPIC-type PPIASE domain
31415125444Zn-finger in Ran binding protein and others
1035342261213132Zinc finger C-x8-C-x5-C-x3-H type (and similar)
144332320B-box zinc finger
1211117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2424010434105F-box domain
155312219Calpain family cysteine protease
1261085101162CRAL/TRIO domain
133212214BTB/POZ domain
356414427Voltage gated chloride channel
11215Caspase domain
114122213GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
123NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
71012757755ABC transporter transmembrane region
22Integrase core domain
433524425FAD binding domain
112Condensation domain
11111218S-adenosyl-L-homocysteine hydrolase, NAD binding domain
22HAMP domain
31118115ribosomal L5P family C-terminus
777727744Insulinase (Peptidase family M16)
444414425Dehydrogenase E1 component
11111218Lumazine binding domain
8991069960Elongation factor G C-terminus
333212216HMGL-like
222211212DnaJ central domain
22324417Sulfotransferase domain
7910116741Starch binding domain
444323525Ribosomal protein L1p/L10e family
445535531Cation transporting ATPase, C-terminus
645548739Cation transporter/ATPase, N-terminus
33OmpA family
11111218dUTPase
12211119Aconitase C-terminal domain
877749850Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
222212213Acyl transferase domain
111115Urease beta subunit
1121117Dihydrodipicolinate synthetase family
12334032171512161haloacid dehalogenase-like hydrolase
11121118Glycosyl hydrolases family 2
11111117Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
212222213Translation initiation factor IF-3, C-terminal domain
11111117Adenylosuccinate synthetase
11121118Asparaginase, N-terminal
234322218Peptidase S24-like
1111116Inorganic pyrophosphatase
111115Glycosyl hydrolases family 16
112NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
476425533HhH-GPD superfamily base excision DNA repair protein
1111217AIR carboxylase
11GMC oxidoreductase
144425424Asparagine synthase
1111116Fungal cellulose binding domain
112Photosystem II 10 kDa phosphoprotein
222222214Homoserine dehydrogenase
112228Flavin-binding monooxygenase-like
11111117Glutamyl-tRNAGlu reductase, dimerisation domain
334315322tRNA synthetases class I (E and Q), catalytic domain
222222214tRNA synthetases class I (R)
43354524XPG N-terminal domain
911131049763Metallo-beta-lactamase superfamily
22116F5/8 type C domain
1212118Putative esterase
1111116Ferrochelatase
23332215Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
444424426RNB domain
11Dioxygenase
78179Glycosyltransferase family 29 (sialyltransferase)
466324328Diacylglycerol kinase catalytic domain
81010328849Dual specificity phosphatase, catalytic domain
111115MyTH4 domain
22
645659742PX domain
576523432UBX domain
11111117VHS domain
1111116Phosphoinositide 3-kinase C2
213DAHP synthetase I family
548215429Carbon-nitrogen hydrolase
11Photosystem I reaction centre subunit VIII
11111117Prephenate dehydratase
234323320Syntaxin
366515430Pentapeptide repeats (8 copies)
222211212Pumilio-family RNA binding repeat
667526638Histone-like transcription factor (CBF/NF-Y) and archaeal histone
222213214Pterin binding enzyme
212312213ER lumen protein retaining receptor
23222213Glycoprotease family
11111229Histidinol dehydrogenase
335414424impB/mucB/samB family
1111116Ribonuclease P
11114
11111117Ribosomal L15
41114415Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
222211212Ribosomal prokaryotic L21 protein
222212213Ribosomal L28 family
22221211Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
433333322Ribulose-phosphate 3 epimerase family
112Cysteine rich repeat
71413947862AP2 domain
11Ring hydroxylating alpha subunit (catalytic domain)
1120181741716103RNA pseudouridylate synthase
79910512860Histone deacetylase domain
65314Glycosyltransferase family 10 (fucosyltransferase) C-term
111115POT family