PFAM Domains • Viridiplantae
Annotations/GenomesAraly1Astpho2Auxeprot1Batpra1ChlNC64A_1Chlre4Chrzof1Coc_C169_1Dicre1Dunsal1Gonpec1MicpuC3v2MicpuN3v2Monneg1Ost9901_3OstRCC809_2Ostta1115_2Ostta4221_3Phypa1_1Picsp_1Poptr1_1Rapsub1SceoblEN4_1Selmo1Sobl393_1Sorbi1SymretAf1SymretSc1SymretSp1SymretSw1Volca1TotalAnnotation Description
PFAMs
7,9526,9667,8876,6897,56512,0577,7979,75010,95812,1488,0298,40910,4015,4773,1168,2817,79616,7627,19831,24811,19710,78215,05513,70423,79110,0489,9649,95710,0633,419314,466
60445048526250566161585756462955519347144625779708758585758371,803ATPase family associated with various cellular activities (AAA)
57464360647355765782525390472348451125220682751358913074728073302,181ABC transporter
43634645545565313497136565955552167ATP synthase alpha/beta family, nucleotide-binding domain
313931111253122139EGF-like domain
211719161725202025212121192114232138224021212427311919191910651Elongation factor Tu GTP binding domain
3312855342213121194160514651505334523Helix-loop-helix DNA-binding domain
132236867167344314424243651873367861259Hsp20/alpha crystallin family
12891189109121511101110481021731991683099995339Hsp70 protein
1212171313131112131233331021142223201155158181331131313134511KH domain
121112211113Kunitz/Bovine pancreatic trypsin inhibitor domain
369Methyl-accepting chemotaxis protein (MCP) signalling domain
222214211320Ribulose bisphosphate carboxylase large chain, catalytic domain
121217SH2 domain
11111811145135SH3 domain
9313117TNFR/NGFR cysteine-rich region
66745126667448647716419951081866662220Actin
531151111074637155499911112657187105811215211459345814151512281,412Ankyrin repeat
1212122333141153623865733331175PAN domain
1188716118812141011117577317241211121422888811337ADP-ribosylation factor family
211331810112214233252682426782991191303Eukaryotic aspartyl protease
2251171824121616282932161151515155352014122723171816183505Cyclic nucleotide-binding domain
12148Beta/Gamma crystallin
11121111259213111111147Cystatin domain
13111111711514130Cytochrome b(C-terminal)/b6/petD
172313Cytochrome b/b6/petB
2123412111221111511211414111159Cytochrome c
322241412121110332113231109Double-stranded RNA binding motif
4314010123343989363518121281212319441571351,116EF hand
311661521331421311921271764Fe-4S binding domain
11Fibronectin type II domain
2218452134237211157413546211111100Fibronectin type III domain
11124211215Globin
12356914128811121193366202583931107198891377Glutathione S-transferase, C-terminal domain
3344323343553333314294355733332120Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
313222111117144534276117137111219Homeodomain
116722331325132222250Kazal-type serine protease inhibitor domain
711322218Kringle domain
112Laminin B (Domain IV)
121211111213Laminin EGF domain
556556645555455451441966871244444181lactate/malate dehydrogenase, NAD binding domain
15276215191251Lectin C-type domain
231712134611234816627222222155Ligand-gated ion channel
33233332332291111831262441222322107Myosin head (motor domain)
21115LNR domain
2211102035493832343812125210611107063213345196563313130313161,589Cytochrome P450
2114Phospholipase A2
18210688200423257150200246584122134304102509795626981,6452822225622831,2152122072032051889,288Protein kinase domain
159915161816151118121471181082410281315151927151515158431Pyridine nucleotide-disulphide oxidoreductase
18912121419141314301315151251213609731817231954131313137572Ras family
1149712108714141311884138717989828134567773470Response regulator receiver domain
1122122111130262174RNase H
9259508885978478888183799459264752178603181188914710324077737777382,837RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
3138366131231442150Reverse transcriptase (RNA-dependent DNA polymerase)
21141241326151750Serpin (serine protease inhibitor)
2333133785442Copper/zinc superoxide dismutase (SODC)
6415446354113111435553533333297Iron/manganese superoxide dismutases, alpha-hairpin domain
1111519101912111721863822321811793057608954111111112641Subtilase family
1212919162222218776281541211367942528423795211921207683Sugar (and other) transporter
2114Sushi repeat (SCR repeat)
3026392826352930323943443425163736522960423735474733333333111,041Thioredoxin
111111111110Trefoil (P-type) domain
101234911119471410193422101110251011119111114115301Trypsin
2432131111131125Thrombospondin type 1 domain
967410106791188108477327319960101877779344Tubulin/FtsZ family, GTPase domain
31652211112116921537222268von Willebrand factor type A domain
72108231231317101117211541350214312115517Zinc finger, C2H2 type
5544537965454774777481654154538677146103537546281,620Zinc finger, C3HC4 type (RING finger)
15110171228108161417179102582095140111840111289118126807Zinc knuckle
113221112232232122527212211111380Ribulose bisphosphate carboxylase, small chain
21351131121312416321111249Protein-tyrosine phosphatase
572224413658705441353835461910222350231284642615810354555354171,375short chain dehydrogenase
23108131322231916131010171211193512671215481845171718195558Zinc-binding dehydrogenase
22142222221131121415225152222367Thiolase, N-terminal domain
31231344131111510612825147109610755201916121263Beta-ketoacyl synthase, N-terminal domain
977151310107111191088567215271211201522777793232Fe-2S iron-sulfur cluster binding domain
9771615278841681038951091284794336864588984529Papain family cysteine protease
11111121111131111415224231111148Enolase, C-terminal TIM barrel domain
11Pilin (bacterial filament)
214113113Cytochrome C and Quinol oxidase polypeptide I
11111131111112118Cytochrome C oxidase subunit II, periplasmic domain
75665768877736486106177512111388885224Glutamine amidotransferase class-I
1312111112131112141512112114811112710311311171221121111128408TCP-1/cpn60 chaperonin family
121114142219ATP synthase A chain
3113545335335112112394444533332108Glutamine synthetase, catalytic domain
223211221132242326241213222262Triosephosphate isomerase
1314151520241616191813152215817142615612422283332171719165589E1-E2 ATPase
222931120Photosynthetic reaction centre protein
29261633124313520681261616191251013491546364023276020202020441,019Core histone H2A/H2B/H3/H4
1111429111141Bacterial regulatory helix-turn-helix protein, lysR family
12111111112211111312111111111237Copper binding proteins, plastocyanin/azurin family
1167981011810615167988815811813111716988810299Alpha amylase, catalytic domain
1113Phorbol esters/diacylglycerol binding domain (C1 domain)
108781210159781610986661875713917101599998345Bacterial transferase hexapeptide (six repeats)
476857576555991669615661081366764203tRNA synthetases class I (I, L, M and V)
879614167117227815105883075618211626471110101112443Cyclin, N-terminal domain
11122111111Carboxylesterase family
653547575644432339545356567763147DNA polymerase family B
314242224423441939492242522222101ATP synthase subunit C
33473983
221122650111452134Legume lectin domain
11111214214Sigma-70 factor, region 1.2
534361265743593144595120410981213455553549Peroxidase
1124Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
11223232112241232438Beta-lactamase
43765107569128653565256831055555171C-5 cytosine-specific DNA methylase
113182319NADH dehydrogenase
134Fibrinogen beta and gamma chains, C-terminal globular domain
1113Nitrogenase component 1 type Oxidoreductase
33232439252533342322303023201519195423702827453864363635368937Calcineurin-like phosphoesterase
282213102225115134691313144161122242325270Cellulase (glycosyl hydrolase family 5)
6565585665669746674126696855555184tRNA synthetases class II (D, K and N)
3728373244484137534343474842163939892490404460516239364036221,307Mitochondrial carrier protein
1111311111111161111127recA bacterial DNA recombination protein
1716111111222017241914142912715122411492422162234171717177548Aminotransferase class I and II
9465977466884926616420861282144443220Phosphoribosyl transferase domain
2111123114112111125Sigma-54 interaction domain
17172618242319212624272817237262634184023272122292021222116683Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
156Ribosome inactivating protein
2222213233226222826223332222277Phosphoglycerate kinase
3231122212223115272532415223273Ribosomal protein S4/S9 N-terminal domain
12212211221131161528323241111164Ribosomal protein S12/S23
21627Bacterial regulatory helix-turn-helix proteins, AraC family
4444444444334413310454476744441125Chaperonin 10 Kd subunit
177716282614131220161910114887461161312481986131311126665C2 domain
9328575674772523324529641262088872224PH domain
107576171223410998536836106715919127826262329499bZIP transcription factor
1085881191471157156297178291011281517141414147340Aldehyde dehydrogenase family
147196141112712102222101913202024818141315162067778401Cytochrome b5-like Heme/Steroid binding domain
21322332313342122524432652222280Oxidoreductase molybdopterin binding domain
10891181210131211991411599169181213111917131313135342Oxidoreductase NAD-binding domain
24202319173427262627273031219232341195333273536392727262712809SNF2 family N-terminal domain
113223113211311615217325331111178Ribosomal protein S7p/S5e
20171823211724232623192017136141439156221213331502423232313693Ubiquitin-conjugating enzyme
432345442421732293134355744442119Isocitrate/isopropylmalate dehydrogenase
323222222222221724212222362222182Ribosomal Proteins L2, RNA binding domain
11102131811772Chitinase class I
33443434534444334103114362733333123Hsp90 protein
22222322222212122423222222222161Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111211111111113111112222136Dihydrofolate reductase
129201131056Chitin recognition protein
22813615161610319712121513111113168Cysteine-rich secretory protein family
113122112211316153732424111163Ribosomal protein S3, C-terminal domain
3141625173921563515667269Cupin
141111171431154Annexin
1143421531142182514991111286Eukaryotic-type carbonic anhydrase
11231724237111191Chalcone and stilbene synthases, N-terminal domain
3710Bacterial regulatory proteins, luxR family
20222Trypsin and protease inhibitor
55446655534455344851055548555541512-oxoacid dehydrogenases acyltransferase (catalytic domain)
2111242111714123142222148Catalase
21421432120Disintegrin
1131371911105114710631414220191922482UDP-glucoronosyl and UDP-glucosyl transferase
773878789746