Status
(Mar 2016) The Acidothrix acidophila CBS 136259 genome was sequenced using Illumina, assembled with AllPathsLG release version R49403, and annotated with the JGI annotation pipeline.
Summary statistics for the Acidothrix acidophila CBS
136259 v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 37.77 |
Sequencing read coverage depth | 143.7x |
# of contigs | 798 |
# of scaffolds | 713 |
# of scaffolds >= 2Kbp | 670 |
Scaffold N50 | 112 |
Scaffold L50 (Mbp) | 0.10 |
# of gaps | 85 |
% of scaffold length in gaps | 0.1% |
Three largest Scaffolds (Mbp) | 0.70, 0.48, 0.42 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 42843 | 40979 | 95.6% |
Ests | est.fasta | 329318423 | 325279133 | 98.8% |
Gene Models | FilteredModels2 | |
length (bp) of: | average | median |
gene | 1725 | 1487 |
transcript | 1523 | 1288 |
exon | 530 | 315 |
intron | 110 | 85 |
description: | ||
protein length (aa) | 450 | 369 |
exons per gene | 2.87 | 2 |
# of gene models | 11057 |
Collaborators
Milan Gryndler, Academy of Sciences of the Czech Republic
Joseph W. Spatafora, Oregon State University
Links
Laboratory of Fungal Biology, Institute of Microbiology, Academy of Sciences of the Czech Republic
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.