Info • Alaria esculenta A1

Status

The Alaria esculenta A1 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Figshare on Nov 4, 2022. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 11,890 models from A. esculenta and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by Figshare and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 487.80
# of contigs 1931
# of scaffolds 1931
# of scaffolds >= 2Kbp 1931
Scaffold N50 114
Scaffold L50 (Mbp) 1.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.29, 5.87, 5.19


Gene Models FilteredModels1
length (bp) of: average median
gene 11923 8872
transcript 1759 1284
exon 223 140
intron 1479 971
description:
protein length (aa) 586 428
exons per gene 7.88 6
# of gene models 18078


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.