Info • Alternaria sp. UNK v1.0

Status

[April 2023] The Alternaria sp. UNK v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 33.60
Sequencing read coverage depth 125.03x
# of contigs 11
# of scaffolds 11
# of scaffolds >= 2Kbp 11
Scaffold N50 4
Scaffold L50 (Mbp) 3.14
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.77, 5.51, 3.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33753 33330 98.7%
Ests est.fasta 34781637 34616017 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1987 1661
transcript 1822 1546
exon 639 409
intron 91 56
description:
protein length (aa) 516 418
exons per gene 2.85 2
# of gene models 12258


Collaborators

This work was authored [in part] by the National Renewable Energy Laboratory (NREL), operated by Alliance for Sustainable Energy, LLC, for the U.S. Department of Energy (DOE) under Contract No. DE-AC36-08GO28308. This work was supported by the Laboratory Directed Research and Development (LDRD) Program at NREL. The views expressed in the article do not necessarily represent the views of the DOE or the U.S. Government.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.