Info • Alternaria solani BMP0185

Status

The genome sequence and gene prediction of Alternaria solani BMP0185 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria solani BMP0185 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.13
Sequencing read coverage depth unknown
# of contigs 2945
# of scaffolds 2945
# of scaffolds >= 2Kbp 2437
Scaffold N50 544
Scaffold L50 (Mbp) 0.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.09, 0.09, 0.08


Gene Models ExternalModels
length (bp) of: average median
gene 1454 1230
transcript 1343 1128
exon 551 330
intron 79 56
description:
protein length (aa) 448 376
exons per gene 2.44 2
# of gene models 12258


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.