Info • Alternaria sp. UNIPAMPA017 v1.0

Status

[February 2021] The Alternaria sp. UNIPAMPA017 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 42.69
Sequencing read coverage depth 28.32x
# of contigs 27
# of scaffolds 27
# of scaffolds >= 2Kbp 27
Scaffold N50 6
Scaffold L50 (Mbp) 3.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.53, 3.72, 3.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33346 28900 86.7%
Ests est.fasta 124136006 122917277 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1736 1505
transcript 1611 1392
exon 610 398
intron 78 55
description:
protein length (aa) 451 370
exons per gene 2.64 2
# of gene models 13067


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.