Info • Alternaria tomatophila BMP2032


The genome sequence and gene prediction of Alternaria tomatophila BMP2032 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria tomatophila BMP2032 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.33
Sequencing read coverage depth unknown
# of contigs 2756
# of scaffolds 2756
# of scaffolds >= 2Kbp 2123
Scaffold N50 442
Scaffold L50 (Mbp) 0.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.11, 0.10, 0.09

Gene Models ExternalModels
length (bp) of: average median
gene 1479 1238
transcript 1369 1140
exon 563 333
intron 79 56
protein length (aa) 456 380
exons per gene 2.43 2
# of gene models 12601


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.