Info • Ambrosiozyma philentoma NRRL Y-7523

Status

The genome of Ambrosiozyma philentoma NRRL Y-7523 was sequenced using Illumina HiSeq 2500 and assembled using DISCOVAR v. 51885, SPAdes v. 3.5.1, and MASURCA v. 3. Please note that this copy of the genome is not maintained by Antonis Rokas or the publication authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Ambrosiozyma philentoma NRRL Y-7523 release are below.
Genome Assembly
Genome Assembly size (Mbp) 17.71
Sequencing read coverage depth 93x
# of contigs 475
# of scaffolds 474
# of scaffolds >= 2Kbp 99
Scaffold N50 12
Scaffold L50 (Mbp) 0.55
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.12, 0.92, 0.85


Gene Models ExternalModels
length (bp) of: average median
gene 1705 1387
transcript 1581 1333
exon 1223 1036
intron 426 248
description:
protein length (aa) 527 444
exons per gene 1.29 1
# of gene models 6975


Collaborators

Kenneth H Wolfe, University College Dublin, Ireland.

Antonis Rokas, Vanderbilt University, U.S.A.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7

Funding

This project was not sequenced at the JGI.