Info • Amoebophrya ceratii AT5.2

Status

The Amoebophrya ceratii AT5.2 genome sequence and gene models have not been determined by the JGI, but were downloaded from John et al. 2019 on September 16, 2019. Please note that this copy of the genome is not maintained by John et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Amoebophrya ceratii AT5.2 release are below.
Genome Assembly
Genome Assembly size (Mbp) 87.69
Sequencing read coverage depth
# of contigs 9110
# of scaffolds 2351
# of scaffolds >= 2Kbp 2062
Scaffold N50 298
Scaffold L50 (Mbp) 0.08
# of gaps 6759
% of scaffold length in gaps 2.2%
Three largest Scaffolds (Mbp) 0.54, 0.41, 0.40


Gene Models ExternalModels
length (bp) of: average median
gene 2782 1803
transcript 1964 1269
exon 579 320
intron 339 230
description:
protein length (aa) 655 423
exons per gene 3.39 3
# of gene models 19925


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.