Status
The Amoebophrya ceratii AT5.2 genome sequence and gene models have not been determined by the JGI, but were downloaded from John et al. 2019 on September 16, 2019. Please note that this copy of the genome is not maintained by John et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Amoebophrya ceratii AT5.2
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 87.69 |
Sequencing read coverage depth | |
# of contigs | 9110 |
# of scaffolds | 2351 |
# of scaffolds >= 2Kbp | 2062 |
Scaffold N50 | 298 |
Scaffold L50 (Mbp) | 0.08 |
# of gaps | 6759 |
% of scaffold length in gaps | 2.2% |
Three largest Scaffolds (Mbp) | 0.54, 0.41, 0.40 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 2782 | 1803 |
transcript | 1964 | 1269 |
exon | 579 | 320 |
intron | 339 | 230 |
description: | ||
protein length (aa) | 655 | 423 |
exons per gene | 3.39 | 3 |
# of gene models | 19925 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
John U, Lu Y, Wohlrab S, Groth M, Janouškovec J, Kohli GS, Mark FC, Bickmeyer U, Farhat S, Felder M, Frickenhaus S, Guillou L, Keeling PJ, Moustafa A, Porcel BM, Valentin K, Glöckner G
An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome.
Sci Adv. 2019 Apr;5(4):eaav1110. doi: 10.1126/sciadv.aav1110
John U, Lu Y, Wohlrab S, Groth M, Janouškovec J, Kohli GS, Mark FC, Bickmeyer U, Farhat S, Felder M, Frickenhaus S, Guillou L, Keeling PJ, Moustafa A, Porcel BM, Valentin K, Glöckner G
An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome.
Sci Adv. 2019 Apr;5(4):eaav1110. doi: 10.1126/sciadv.aav1110
Funding
This project was not sequenced at the JGI.