Info • Annulohypoxylon bovei var. microspora CBS 124037 v1.0

Status

[July 2019] The Annulohypoxylon bovei var. microspora CBS 124037 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Annulohypoxylon bovei var. microspora CBS 124037 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.76
Sequencing read coverage depth 94.2976100403x
# of contigs 500
# of scaffolds 496
# of scaffolds >= 2Kbp 450
Scaffold N50 60
Scaffold L50 (Mbp) 0.23
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.67, 0.64, 0.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46876 46165 98.5%
Ests est.fasta 124971490 124334468 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2030 1801
transcript 1855 1641
exon 622 390
intron 90 66
description:
protein length (aa) 485 408
exons per gene 2.98 3
# of gene models 11202


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.