Status
[August 2019] The Annulohypoxylon maeteangense CBS 123835 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Annulohypoxylon maeteangense
CBS 123835 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.25 |
| Sequencing read coverage depth | 145.662734429x |
| # of contigs | 69 |
| # of scaffolds | 64 |
| # of scaffolds >= 2Kbp | 62 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.64 |
| # of gaps | 5 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.36, 3.21, 2.79 |
Note: Low EST mapping was attributed to the presence of ~70% rRNA.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 36640 | 35360 | 96.5% |
| Ests | est.fasta | 269724464 | 88591813 | 32.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2038 | 1804 |
| transcript | 1870 | 1649 |
| exon | 628 | 396 |
| intron | 87 | 65 |
| description: | ||
| protein length (aa) | 494 | 416 |
| exons per gene | 2.98 | 3 |
| # of gene models | 11000 |
Collaborators
- Jana M. U'Ren, University of Arizona, AZ
- A. Elizabeth Arnold, University of Arizona, AZ
- Jennifer H. Wisecaver, Purdue University, IN
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873
Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Xylariales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
