Info • Annulohypoxylon nitens CBS 120705 v1.0

Status

[July 2019] The Annulohypoxylon nitens CBS 120705 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Annulohypoxylon nitens CBS 120705 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.54
Sequencing read coverage depth 132.05173759x
# of contigs 71
# of scaffolds 71
# of scaffolds >= 2Kbp 70
Scaffold N50 8
Scaffold L50 (Mbp) 1.33
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.15, 3.86, 2.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48280 47848 99.1%
Ests est.fasta 161849661 161262398 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2044 1826
transcript 1883 1668
exon 636 401
intron 84 65
description:
protein length (aa) 493 416
exons per gene 2.96 3
# of gene models 11873


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.