Status
[March 2023] The Anthracobia sp. CZU genome was sequenced using PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. The low percentage of RNA contigs mapped to the genome is likely due to bacterial contamination.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 53.43 |
| Sequencing read coverage depth | 169.64x |
| # of contigs | 104 |
| # of scaffolds | 104 |
| # of scaffolds >= 2Kbp | 104 |
| Scaffold N50 | 20 |
| Scaffold L50 (Mbp) | 0.91 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.08, 2.56, 1.96 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 91175 | 36760 | 40.3% |
| Ests | est.fasta | 178626194 | 74007949 | 41.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1650 | 1396 |
| transcript | 1462 | 1218 |
| exon | 457 | 283 |
| intron | 87 | 59 |
| description: | ||
| protein length (aa) | 420 | 334 |
| exons per gene | 3.20 | 3 |
| # of gene models | 14194 |
Collaborators
- Tom Bruns at University of California Berkeley
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes Pezizales Pyronemataceae
- JGI Pyrophilous Fungi EcoGroup portal
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
