Apatococcus fuscideae SAG 2523 [Image credit: T. Darienko: 2016-11-22; SAG Culture Collection, licensed under CC BY-SA 4.0]

The Apatococcus lobatus SAG 2145 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on August 8, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 2,135 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, and 4) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Apatococcus lobatus SAG 2145

Apatococcus lobatus is a green alga (Archaeplastida, Viridiplantae, Phylum Chlorophyta, Class Trebouxiophyceae) isolated from the bark of a Platanus tree species in Basel, Switzerland. This genome was sequenced for comparative analysis against lichen photobiont relatives, as part of a larger study of 12 Trebouxiophyceae and Ulvophyceae species.