Info • Aquilomyces patris DSE4099 v1.0

Status

[April 2021] The Aquilomyces patris DSE4099 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 49.87
Sequencing read coverage depth 61.91
# of contigs 38
# of scaffolds 38
# of scaffolds >= 2Kbp 38
Scaffold N50 11
Scaffold L50 (Mbp) 1.84
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.53, 2.69, 2.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45386 44671 98.4%
Ests est.fasta 212742726 211312167 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1799 1566
transcript 1658 1437
exon 597 388
intron 81 56
description:
protein length (aa) 464 382
exons per gene 2.78 2
# of gene models 15960


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.