Status
The genome sequence and gene prediction of Armillaria mellea were not determined by the JGI, but were recieved from David A. Fitzpatrick ([email protected]) and have been published (pubmed: 23656496). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for Armillaria mellea DSM 3731 are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 79.55 |
| Sequencing read coverage depth | 57.25x |
| # of contigs | 36822 |
| # of scaffolds | 29300 |
| # of scaffolds >= 2Kbp | 4948 |
| Scaffold N50 | 680 |
| Scaffold L50 (Mbp) | 0.02 |
| # of gaps | 7522 |
| % of scaffold length in gaps | 15.4% |
| Three largest Scaffolds (Mbp) | 0.64, 0.59, 0.47 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1613 | 1269 |
| transcript | 1246 | 1002 |
| exon | 207 | 124 |
| intron | 75 | 55 |
| description: | ||
| protein length (aa) | 415 | 334 |
| exons per gene | 6.02 | 4 |
| # of gene models | 14473 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Collins C, Keane TM, Turner DJ, O'Keeffe G, Fitzpatrick DA, Doyle S
Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system.
J Proteome Res. 2013 Jun 7;12(6):2552-70. doi: 10.1021/pr301131t
Collins C, Keane TM, Turner DJ, O'Keeffe G, Fitzpatrick DA, Doyle S
Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system.
J Proteome Res. 2013 Jun 7;12(6):2552-70. doi: 10.1021/pr301131t
Funding
This project was not sequenced at the JGI.
