Status
Jul 2014. Artolenzites elegans v1.0 is a standard draft assembly produced with Illumina reads and and assembled with AllpathsLG.
Summary statistics for the Artolenzites elegans CIRM1663
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.08 |
| Sequencing read coverage depth | 86.1 |
| # of contigs | 638 |
| # of scaffolds | 243 |
| # of scaffolds >= 2Kbp | 213 |
| Scaffold N50 | 26 |
| Scaffold L50 (Mbp) | 0.37 |
| # of gaps | 395 |
| % of scaffold length in gaps | 1.7% |
| Three largest Scaffolds (Mbp) | 1.56, 1.34, 1.30 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 42289 | 40741 | 96.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1788 | 1512 |
| transcript | 1455 | 1227 |
| exon | 254 | 154 |
| intron | 72 | 59 |
| description: | ||
| protein length (aa) | 410 | 334 |
| exons per gene | 5.72 | 4 |
| # of gene models | 12851 |
Collaborators
Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
