Status
[April 2024] The Arthrobotrys iridis 316A_c6_1 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 38.51 |
| Sequencing read coverage depth | 149.79x |
| # of contigs | 147 |
| # of scaffolds | 141 |
| # of scaffolds >= 2Kbp | 125 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 1.23 |
| # of gaps | 6 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.47, 3.09, 2.44 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 43653 | 43130 | 98.8% |
| Ests | est.fasta | 104450144 | 103376137 | 99.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2062 | 1762 |
| transcript | 1827 | 1560 |
| exon | 516 | 322 |
| intron | 95 | 72 |
| description: | ||
| protein length (aa) | 515 | 419 |
| exons per gene | 3.54 | 3 |
| # of gene models | 10802 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Orbiliomycetes
- JGI EcoGroup Portals: Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
