Info • Arthrobotrys oligospora ATCC 24927

Status

This genome was sequenced by Jinkui Yang, Lei Wang, Xinglai Ji et al. in Laboratory for Conservation and Utilization of Bio-Resources, and Key Laboratory of Microbial Diversity in Southwest China, Ministry of Education, Yunnan University, Kunming, P. R. China (Genomic and proteomic analyses of the fungus Arthrobotrys oligospora provide insights into nematode-trap formation). Please check their data use policies.

Summary statistics for the Arthrobotrys oligospora ATCC 24927 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.07
Sequencing read coverage depth 36.6x
# of contigs 309
# of scaffolds 215
# of scaffolds >= 2Kbp 215
Scaffold N50 8
Scaffold L50 (Mbp) 2.04
# of gaps 94
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.32, 3.19, 2.83


Gene Models ExternalModels
length (bp) of: average median
gene 1692 1397
transcript 1499 1224
exon 473 264
intron 91 74
description:
protein length (aa) 500 408
exons per gene 3.17 3
# of gene models 11479


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Yang J, Wang L, Ji X, Feng Y, Li X, Zou C, Xu J, Ren Y, Mi Q, Wu J, Liu S, Liu Y, Huang X, Wang H, Niu X, Li J, Liang L, Luo Y, Ji K, Zhou W, Yu Z, Li G, Liu Y, Li L, Qiao M, Feng L, Zhang KQ
Genomic and proteomic analyses of the fungus Arthrobotrys oligospora provide insights into nematode-trap formation.
PLoS Pathog. 2011 Sep;7(9):e1002179. doi: 10.1371/journal.ppat.1002179

Funding

This project was not sequenced at the JGI.