Status
The Ascobolus immersus RN42 genome was sequenced using the Illumina platform, assembled with AllPathsLG, and annotated with the JGI annotation pipeline and custom analyses.
Summary statistics for the Ascobolus immersus RN42 v1.0
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 59.53 |
| Sequencing read coverage depth | 86.3 |
| # of contigs | 1225 |
| # of scaffolds | 706 |
| # of scaffolds >= 2Kbp | 548 |
| Scaffold N50 | 60 |
| Scaffold L50 (Mbp) | 0.27 |
| # of gaps | 519 |
| % of scaffold length in gaps | 1.1% |
| Three largest Scaffolds (Mbp) | 1.46, 1.44, 1.21 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | CombestEstClusters | 50164 | 50065 | 99.8% |
| Other | RNAseq_contigs | 26286 | 24659 | 93.8% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1575 | 1290 |
| transcript | 1409 | 1137 |
| exon | 528 | 356 |
| intron | 102 | 59 |
| description: | ||
| protein length (aa) | 411 | 321 |
| exons per gene | 2.67 | 2 |
| # of gene models | 17877 |
Collaborators
Joey Spatafora, Department of Botany and Plant Pathology, Oregon State University
Fabienne Malagnac, Institut de Génétique et Microbiologie, Université Paris-Sud
Francis Martin, Université de Nancy, France
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, ŽifÄáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Murat C, Payen T, Noel B, Kuo A, Morin E, Chen J, Kohler A, Krizsán K, Balestrini R, Da Silva C, Montanini B, Hainaut M, Levati E, Barry KW, Belfiori B, Cichocki N, Clum A, Dockter RB, Fauchery L, Guy J, Iotti M, Le Tacon F, Lindquist EA, Lipzen A, Malagnac F, Mello A, Molinier V, Miyauchi S, Poulain J, Riccioni C, Rubini A, Sitrit Y, Splivallo R, Traeger S, Wang M, ŽifÄáková L, Wipf D, Zambonelli A, Paolocci F, Nowrousian M, Ottonello S, Baldrian P, Spatafora JW, Henrissat B, Nagy LG, Aury JM, Wincker P, Grigoriev IV, Bonfante P, Martin FM
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.
Nat Ecol Evol. 2018 Dec;2(12):1956-1965. doi: 10.1038/s41559-018-0710-4
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
