Info • Ascodesmis nigricans CBS 389.68 v1.0

Status

Assembly v1 (September 2014) is a standard draft assembly of Illumina gDNAs using AllPathsLG.

Summary statistics for the Ascodesmis nigricans CBS 389.68 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.39
Sequencing read coverage depth 96.9x
# of contigs 407
# of scaffolds 176
# of scaffolds >= 2Kbp 136
Scaffold N50 14
Scaffold L50 (Mbp) 0.49
# of gaps 231
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 2.97, 2.35, 1.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 22983 22392 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1661 1383
transcript 1502 1230
exon 489 311
intron 79 59
description:
protein length (aa) 420 330
exons per gene 3.07 3
# of gene models 9622


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.