Status
Assembly v1 (September 2014) is a standard draft assembly of Illumina gDNAs using AllPathsLG.
Summary statistics for the Ascodesmis nigricans CBS 389.68
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.39 |
| Sequencing read coverage depth | 96.9x |
| # of contigs | 407 |
| # of scaffolds | 176 |
| # of scaffolds >= 2Kbp | 136 |
| Scaffold N50 | 14 |
| Scaffold L50 (Mbp) | 0.49 |
| # of gaps | 231 |
| % of scaffold length in gaps | 0.8% |
| Three largest Scaffolds (Mbp) | 2.97, 2.35, 1.66 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 22983 | 22392 | 97.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1661 | 1383 |
| transcript | 1502 | 1230 |
| exon | 489 | 311 |
| intron | 79 | 59 |
| description: | ||
| protein length (aa) | 420 | 330 |
| exons per gene | 3.07 | 3 |
| # of gene models | 9622 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lütkenhaus R, Traeger S, Breuer J, Carreté L, Kuo A, Lipzen A, Pangilinan J, Dilworth D, Sandor L, Pöggeler S, Gabaldón T, Barry K, Grigoriev IV, Nowrousian M
Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes.
Genetics. 2019 Dec;213(4):1545-1563. doi: 10.1534/genetics.119.302749
Lütkenhaus R, Traeger S, Breuer J, Carreté L, Kuo A, Lipzen A, Pangilinan J, Dilworth D, Sandor L, Pöggeler S, Gabaldón T, Barry K, Grigoriev IV, Nowrousian M
Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes.
Genetics. 2019 Dec;213(4):1545-1563. doi: 10.1534/genetics.119.302749
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
