Status
The genome sequence and gene prediction of Ascochyta rabiei ArDII have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Assembly Method :: ABySS v. 1.3.5
Sequencing Technology :: Illumina HiSeq
Summary statistics for the Ascochyta rabiei release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.66 |
| Sequencing read coverage depth | |
| # of contigs | 860 |
| # of scaffolds | 338 |
| # of scaffolds >= 2Kbp | 338 |
| Scaffold N50 | 64 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 522 |
| % of scaffold length in gaps | 1.8% |
| Three largest Scaffolds (Mbp) | 1.16, 0.74, 0.60 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1727 | 1395 |
| transcript | 1535 | 1275 |
| exon | 558 | 318 |
| intron | 112 | 56 |
| description: | ||
| protein length (aa) | 512 | 425 |
| exons per gene | 2.75 | 2 |
| # of gene models | 10596 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Verma S, Gazara RK, Nizam S, Parween S, Chattopadhyay D, Verma PK
Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta rabiei provides insight into the necrotrophic effector repertoire.
Sci Rep. 2016 Apr 19;6():24638. doi: 10.1038/srep24638
Verma S, Gazara RK, Nizam S, Parween S, Chattopadhyay D, Verma PK
Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta rabiei provides insight into the necrotrophic effector repertoire.
Sci Rep. 2016 Apr 19;6():24638. doi: 10.1038/srep24638
Funding
This project was not sequenced at the JGI.
