Info • Aspergillus arxii CBS 52583 v1.0

Status

[April 2017] The Aspergillus arxii CBS 525.83 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus arxii CBS 52583 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.92
Sequencing read coverage depth 107.2x
# of contigs 549
# of scaffolds 471
# of scaffolds >= 2Kbp 431
Scaffold N50 40
Scaffold L50 (Mbp) 0.20
# of gaps 78
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.77, 0.62, 0.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33780 31985 94.7%
Ests est.fasta 64480998 38886538 60.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1752 1517
transcript 1595 1372
exon 508 303
intron 76 54
description:
protein length (aa) 439 360
exons per gene 3.14 3
# of gene models 10666


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.