Info • Aspergillus brevipes CBS 118.53 v1.0

Status

[April 2017] The Aspergillus brevipes CBS 118.53 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus brevipes CBS 118.53 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.07
Sequencing read coverage depth 101.3x
# of contigs 271
# of scaffolds 237
# of scaffolds >= 2Kbp 214
Scaffold N50 23
Scaffold L50 (Mbp) 0.44
# of gaps 34
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.31, 1.05, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32828 32209 98.1%
Ests est.fasta 63023368 29666184 47.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1879 1628
transcript 1708 1466
exon 537 321
intron 80 61
description:
protein length (aa) 469 386
exons per gene 3.18 3
# of gene models 10475


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.