Info • Aspergillus brevistipitatus v1.0

Status

[February 2021] The Aspergillus brevistipitatus v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 28.62
Sequencing read coverage depth 86.2x
# of contigs 338
# of scaffolds 320
# of scaffolds >= 2Kbp 290
Scaffold N50 41
Scaffold L50 (Mbp) 0.22
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.21, 0.61, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44829 43413 96.8%
Ests est.fasta 110832194 109895662 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1950 1718
transcript 1778 1557
exon 550 335
intron 79 61
description:
protein length (aa) 466 388
exons per gene 3.23 3
# of gene models 10133


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.