Status
The genome sequence and gene models of Aspergillus calidoustus have not been determined by the JGI, but were downloaded from NCBI on Sep 16, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Aspergillus calidoustus v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 41.10 |
| Sequencing read coverage depth | |
| # of contigs | 210 |
| # of scaffolds | 78 |
| # of scaffolds >= 2Kbp | 65 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 3.21 |
| # of gaps | 132 |
| % of scaffold length in gaps | 1.3% |
| Three largest Scaffolds (Mbp) | 4.70, 4.24, 4.19 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1662 | 1381 |
| transcript | 1396 | 1161 |
| exon | 450 | 244 |
| intron | 81 | 61 |
| description: | ||
| protein length (aa) | 463 | 386 |
| exons per gene | 2.99 | 2 |
| # of gene models | 15139 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Horn F, Linde J, Mattern DJ, Walther G, Guthke R, Scherlach K, Martin K, Brakhage AA, Petzke L, Valiante V
Draft Genome Sequences of Fungus Aspergillus calidoustus.
Genome Announc. 2016 Mar 10;4(2):. doi: 10.1128/genomeA.00102-16
Horn F, Linde J, Mattern DJ, Walther G, Guthke R, Scherlach K, Martin K, Brakhage AA, Petzke L, Valiante V
Draft Genome Sequences of Fungus Aspergillus calidoustus.
Genome Announc. 2016 Mar 10;4(2):. doi: 10.1128/genomeA.00102-16
Funding
This project was not sequenced at the JGI.
