Status
[February 2021] The Aspergillus capperatus DTO 337-E6 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.20 |
| Sequencing read coverage depth | 143.2x |
| # of contigs | 560 |
| # of scaffolds | 474 |
| # of scaffolds >= 2Kbp | 443 |
| Scaffold N50 | 71 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 86 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.45, 0.38, 0.32 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 40399 | 38221 | 94.6% |
| Ests | est.fasta | 214420305 | 211236266 | 98.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1917 | 1674 |
| transcript | 1758 | 1529 |
| exon | 564 | 343 |
| intron | 77 | 59 |
| description: | ||
| protein length (aa) | 460 | 382 |
| exons per gene | 3.12 | 3 |
| # of gene models | 10316 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
