Status
The Aspergillus cibarius DTO 197-D3 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.08 |
| Sequencing read coverage depth | 137x |
| # of contigs | 373 |
| # of scaffolds | 337 |
| # of scaffolds >= 2Kbp | 301 |
| Scaffold N50 | 49 |
| Scaffold L50 (Mbp) | 0.16 |
| # of gaps | 36 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.49, 0.47, 0.45 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1620 | 1352 |
| transcript | 1441 | 1197 |
| exon | 447 | 237 |
| intron | 82 | 59 |
| description: | ||
| protein length (aa) | 480 | 399 |
| exons per gene | 3.22 | 3 |
| # of gene models | 9889 |
Collaborators
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Aspergillus
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
