Status
The genome sequence and gene models of Aspergillus cristatus GZAAS20.1005 have not been determined by the JGI, but were downloaded from NCBI on 5/28/2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Aspergillus cristatus release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 28.45 |
| Sequencing read coverage depth | |
| # of contigs | 165 |
| # of scaffolds | 68 |
| # of scaffolds >= 2Kbp | 47 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 2.32 |
| # of gaps | 97 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 5.85, 3.06, 3.05 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1571 | 1311 |
| transcript | 1428 | 1173 |
| exon | 479 | 256 |
| intron | 75 | 59 |
| description: | ||
| protein length (aa) | 476 | 391 |
| exons per gene | 2.98 | 3 |
| # of gene models | 10344 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ge Y, Wang Y, Liu Y, Tan Y, Ren X, Zhang X, Hyde KD, Liu Y, Liu Z
Comparative genomic and transcriptomic analyses of the Fuzhuan brick tea-fermentation fungus Aspergillus cristatus.
BMC Genomics. 2016 Jun 7;17():428. doi: 10.1186/s12864-016-2637-y
Ge Y, Wang Y, Liu Y, Tan Y, Ren X, Zhang X, Hyde KD, Liu Y, Liu Z
Comparative genomic and transcriptomic analyses of the Fuzhuan brick tea-fermentation fungus Aspergillus cristatus.
BMC Genomics. 2016 Jun 7;17():428. doi: 10.1186/s12864-016-2637-y
Funding
This project was not sequenced at the JGI.
