Info • Aspergillus elegans CBS 116.39 v1.0

Status

[July 2016] The Aspergillus elegans CBS 116.39 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus elegans v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.55
Sequencing read coverage depth 81.4x
# of contigs 700
# of scaffolds 679
# of scaffolds >= 2Kbp 579
Scaffold N50 68
Scaffold L50 (Mbp) 0.16
# of gaps 21
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.75, 0.68, 0.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52698 51113 97.0%
Ests est.fasta 46616197 44544138 95.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1829 1590
transcript 1650 1427
exon 524 313
intron 85 63
description:
protein length (aa) 467 386
exons per gene 3.15 3
# of gene models 13286


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.