Info • Aspergillus endophyticus DTO 354-I2 v1.0

Status

[February 2021] The Aspergillus endophyticus DTO 354-I2 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 27.50
Sequencing read coverage depth 100.7x
# of contigs 279
# of scaffolds 249
# of scaffolds >= 2Kbp 237
Scaffold N50 40
Scaffold L50 (Mbp) 0.22
# of gaps 30
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.81, 0.62, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35489 34654 97.6%
Ests est.fasta 122283290 121590337 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1842 1590
transcript 1678 1438
exon 532 321
intron 78 59
description:
protein length (aa) 456 377
exons per gene 3.16 3
# of gene models 10426


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.