Info • Aspergillus flavus NRRL3357

Status

The genome sequence and gene prediction of Aspergillus flavus were not determined by the JGI, but were downloaded from the Aspergillus Genome Database (AspGD). Please note that this copy of the genome is not maintained by AspGD and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to AspGD's chromosomes and proteins.

Summary statistics for the Aspergillus flavus NRRL 3357 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 36.79
Sequencing read coverage depth 1
# of contigs 765
# of scaffolds 138
# of scaffolds >= 2Kbp 138
Scaffold N50 6
Scaffold L50 (Mbp) 2.39
# of gaps 627
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 4.47, 4.15, 2.71


Gene Models ExternalModels
length (bp) of: average median
gene 1759 1516
transcript 1493 1278
exon 455 252
intron 119 66
description:
protein length (aa) 461 388
exons per gene 3.28 3
# of gene models 12604


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875

Funding

This project was not sequenced at the JGI.