Info • Aspergillus luchuensis CBS 106.47 v1.0

Status

The Aspergillus acidus CBS 106.47 genome was sequenced using the Illumina platform and assembled with AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Aspergillus foetidus CBS 106.47 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 37.47
Sequencing read coverage depth 65.7
# of contigs 318
# of scaffolds 107
# of scaffolds >= 2Kbp 92
Scaffold N50 6
Scaffold L50 (Mbp) 2.20
# of gaps 211
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 4.26, 3.72, 3.63


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters RNAseq assemblies 51026 44625 87.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1699 1438
transcript 1515 1284
exon 488 286
intron 90 63
description:
protein length (aa) 448 369
exons per gene 3.10 3
# of gene models 13530


Collaborators

Ronald de Vries, CBS Fungal Biodiversity Centre, Institute of the Royal Netherlands Academy of Arts and Sciences

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.