Info • Aspergillus frequens CBS 586.65 v1.0

Status

[April 2017] The Aspergillus frequens CBS 586.65 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus frequens v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.66
Sequencing read coverage depth 84.4x
# of contigs 250
# of scaffolds 239
# of scaffolds >= 2Kbp 215
Scaffold N50 28
Scaffold L50 (Mbp) 0.38
# of gaps 11
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.37, 0.99, 0.87


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 25337 24643 97.3%
Ests est.fasta 65096617 38023931 58.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1835 1596
transcript 1660 1435
exon 521 314
intron 82 62
description:
protein length (aa) 466 394
exons per gene 3.19 3
# of gene models 12444


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.