Status
The genome sequence and gene prediction of Aspergillus
fumigatus were not determined by the JGI, but were downloaded
from the Aspergillus Genome Database (AspGD) on July 19 2012.
Please note that this copy of the genome is not maintained by AspGD
and is therefore not automatically updated. This copy of the genome
does not include the mitochondrial chromosome or genes. The JGI
Annotation Pipeline was used to add additional functional
annotation to AspGD's chromosomes and proteins.
Summary statistics for the Aspergillus fumigatus Af293
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 29.39 |
| Sequencing read coverage depth | 1 |
| # of contigs | 19 |
| # of scaffolds | 8 |
| # of scaffolds >= 2Kbp | 8 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 3.95 |
| # of gaps | 11 |
| % of scaffold length in gaps | 2.0% |
| Three largest Scaffolds (Mbp) | 4.92, 4.84, 4.08 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1634 | 1391 |
| transcript | 1477 | 1245 |
| exon | 505 | 275 |
| intron | 83 | 62 |
| description: | ||
| protein length (aa) | 492 | 415 |
| exons per gene | 2.92 | 2 |
| # of gene models | 9781 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, GarcÃa JL, GarcÃa MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Córdoba S, RodrÃguez-Peña JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
Nature. 2005 Dec 22;438(7071):1151-6. doi: 10.1038/nature04332
Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, GarcÃa JL, GarcÃa MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Córdoba S, RodrÃguez-Peña JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
Nature. 2005 Dec 22;438(7071):1151-6. doi: 10.1038/nature04332
Funding
This project was not sequenced at the JGI.
