Info • Aspergillus germanicus CBS 123887 v1.0

Status

[April 2017] The Aspergillus germanicus CBS 123887 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus germanicus CBS 123887 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.48
Sequencing read coverage depth 78.8x
# of contigs 451
# of scaffolds 430
# of scaffolds >= 2Kbp 393
Scaffold N50 60
Scaffold L50 (Mbp) 0.21
# of gaps 21
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.99, 0.72, 0.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35020 34221 97.7%
Ests est.fasta 55908100 25740585 46.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1797 1586
transcript 1623 1430
exon 513 312
intron 83 61
description:
protein length (aa) 464 394
exons per gene 3.17 3
# of gene models 14761


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.