Status
[April 2017] The Aspergillus karnatakaensis genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Aspergillus karnatakaensis v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.26 |
| Sequencing read coverage depth | 85x |
| # of contigs | 256 |
| # of scaffolds | 239 |
| # of scaffolds >= 2Kbp | 212 |
| Scaffold N50 | 28 |
| Scaffold L50 (Mbp) | 0.42 |
| # of gaps | 17 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.33, 1.06, 1.03 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 35258 | 34794 | 98.7% |
| Ests | est.fasta | 66661921 | 45448630 | 68.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1819 | 1585 |
| transcript | 1657 | 1441 |
| exon | 526 | 321 |
| intron | 77 | 58 |
| description: | ||
| protein length (aa) | 473 | 400 |
| exons per gene | 3.15 | 3 |
| # of gene models | 13540 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Theobald S, Vesth T, Nybo JL, Frisvad JC, Kjærbølling I, Mondo S, LaButti K, Haridas S, Riley R, Kuo AA, Salamov AA, Pangilinan J, Lipzen A, Koriabine M, Yan M, Barry K, Clum A, Lyhne EK, Drula E, Wiebenga A, Müller A, Lubbers RJM, Kun RS, Dos Santos Gomes AC, Mäkelä MR, Henrissat B, Simmons BA, Magnuson JK, Hoof JB, Mortensen UH, Dyer PS, Momany M, Larsen TO, Grigoriev IV, Baker SE, de Vries RP, Andersen MR
Comparative genomics of Aspergillus nidulans and section Nidulantes.
Curr Res Microb Sci. 2025;8():100342. doi: 10.1016/j.crmicr.2025.100342
Theobald S, Vesth T, Nybo JL, Frisvad JC, Kjærbølling I, Mondo S, LaButti K, Haridas S, Riley R, Kuo AA, Salamov AA, Pangilinan J, Lipzen A, Koriabine M, Yan M, Barry K, Clum A, Lyhne EK, Drula E, Wiebenga A, Müller A, Lubbers RJM, Kun RS, Dos Santos Gomes AC, Mäkelä MR, Henrissat B, Simmons BA, Magnuson JK, Hoof JB, Mortensen UH, Dyer PS, Momany M, Larsen TO, Grigoriev IV, Baker SE, de Vries RP, Andersen MR
Comparative genomics of Aspergillus nidulans and section Nidulantes.
Curr Res Microb Sci. 2025;8():100342. doi: 10.1016/j.crmicr.2025.100342
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
