Status
[October 2016] The Aspergillus longivesica CBS 530.71 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.
Summary statistics for the Aspergillus longivesica v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 26.67 |
| Sequencing read coverage depth | 105.9x |
| # of contigs | 507 |
| # of scaffolds | 432 |
| # of scaffolds >= 2Kbp | 405 |
| Scaffold N50 | 64 |
| Scaffold L50 (Mbp) | 0.12 |
| # of gaps | 75 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.60, 0.58, 0.42 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 30829 | 26595 | 86.3% |
| Ests | est.fasta | 60439561 | 58007339 | 96.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1928 | 1683 |
| transcript | 1744 | 1510 |
| exon | 547 | 333 |
| intron | 86 | 67 |
| description: | ||
| protein length (aa) | 474 | 393 |
| exons per gene | 3.19 | 3 |
| # of gene models | 9605 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
