Status
[April 2021] The Aspergillus mangaliensis DTO 316-C1 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.80 |
| Sequencing read coverage depth | 66.7x |
| # of contigs | 262 |
| # of scaffolds | 243 |
| # of scaffolds >= 2Kbp | 226 |
| Scaffold N50 | 32 |
| Scaffold L50 (Mbp) | 0.33 |
| # of gaps | 19 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.97, 0.83, 0.82 |
Please note that this transcriptome data is contaminated. 8.20%
rRNA; Unmapped contigs BLAST to genus Aspergillus, Fusarium, and
some bacterial genera.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 59598 | 41722 | 70.0% |
| Ests | est.fasta | 209174487 | 206984361 | 99.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1992 | 1751 |
| transcript | 1815 | 1592 |
| exon | 561 | 346 |
| intron | 81 | 62 |
| description: | ||
| protein length (aa) | 481 | 404 |
| exons per gene | 3.24 | 3 |
| # of gene models | 12393 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
