Status
[February 2021] The Aspergillus megasporus DTO 048-I3 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.68 |
| Sequencing read coverage depth | 122.9x |
| # of contigs | 510 |
| # of scaffolds | 482 |
| # of scaffolds >= 2Kbp | 450 |
| Scaffold N50 | 72 |
| Scaffold L50 (Mbp) | 0.12 |
| # of gaps | 28 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.44, 0.39, 0.35 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 42869 | 40924 | 95.5% |
| Ests | est.fasta | 248619193 | 242964745 | 97.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1864 | 1615 |
| transcript | 1703 | 1472 |
| exon | 548 | 338 |
| intron | 78 | 59 |
| description: | ||
| protein length (aa) | 446 | 363 |
| exons per gene | 3.11 | 3 |
| # of gene models | 10914 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
