Status
[March 2016] The Aspergillus multicolor CBS 133.54 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline
Summary statistics for the Aspergillus multicolor v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.25 |
| Sequencing read coverage depth | 84.9x |
| # of contigs | 130 |
| # of scaffolds | 113 |
| # of scaffolds >= 2Kbp | 104 |
| Scaffold N50 | 12 |
| Scaffold L50 (Mbp) | 0.82 |
| # of gaps | 17 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.16, 2.43, 2.31 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 29417 | 27399 | 93.1% |
| Ests | est.fasta | 33091460 | 28531724 | 86.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1815 | 1579 |
| transcript | 1648 | 1425 |
| exon | 526 | 318 |
| intron | 80 | 60 |
| description: | ||
| protein length (aa) | 469 | 394 |
| exons per gene | 3.13 | 3 |
| # of gene models | 12821 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
