Status
The Aspergillus niger ATCC 13496 v2.0 genome was
sequenced with PacBio, assembled with Flye, and annotated with the
JGI Annotation Pipeline. Mitochondrial genome was assembled
separately and is available in the Download section.
This is an improved draft assembly of Aspergillus niger
ATCC 13496. Distinct from Aspni_bvT_1,
this strain has been sequenced with PacBio and annotated using a
combination of PacBio transcriptomic data (IsoSeq) as well as new
Illumina RNAseq data.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.01 |
| Sequencing read coverage depth | 35.59x |
| # of contigs | 12 |
| # of scaffolds | 12 |
| # of scaffolds >= 2Kbp | 12 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 4.36 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.19, 4.95, 4.86 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 194740347 | 188549630 | 96.8% |
| Other | Illumina_RNA_contigs | 42682 | 37232 | 87.2% |
| Other | PacBio_RNA_consensi | 109030 | 106874 | 98.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1928 | 1667 |
| transcript | 1740 | 1502 |
| exon | 524 | 310 |
| intron | 83 | 63 |
| description: | ||
| protein length (aa) | 484 | 405 |
| exons per gene | 3.32 | 3 |
| # of gene models | 12492 |
Collaborators
- Michael Freitag, Oregon State University, OR, USA
- Adrian Tsang, Concordia University, Quebec, CA
- Daniel Cullen, US Forest Service, USDA, WI, USA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Aspergillus
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
