Info • Aspergillus niger ATCC 13496 v2.0

Status

The Aspergillus niger ATCC 13496 v2.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the Download section.

This is an improved draft assembly of Aspergillus niger ATCC 13496. Distinct from Aspni_bvT_1, this strain has been sequenced with PacBio and annotated using a combination of PacBio transcriptomic data (IsoSeq) as well as new Illumina RNAseq data.

Genome Assembly
Genome Assembly size (Mbp) 36.01
Sequencing read coverage depth 35.59x
# of contigs 12
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 4
Scaffold L50 (Mbp) 4.36
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.19, 4.95, 4.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 194740347 188549630 96.8%
Other Illumina_RNA_contigs 42682 37232 87.2%
Other PacBio_RNA_consensi 109030 106874 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1928 1667
transcript 1740 1502
exon 524 310
intron 83 63
description:
protein length (aa) 484 405
exons per gene 3.32 3
# of gene models 12492


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.